miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18048 3' -53.9 NC_004680.1 + 23864 0.66 0.830984
Target:  5'- cGCCGUCAcAUCgGUgACAUCG-GCCa -3'
miRNA:   3'- -UGGCAGUuUGGgCAgUGUGGCuUGGc -5'
18048 3' -53.9 NC_004680.1 + 23499 0.68 0.72259
Target:  5'- uGCCGUCAcggucaaacaGGCCCaUCAUgucguuGCCGAACgCGa -3'
miRNA:   3'- -UGGCAGU----------UUGGGcAGUG------UGGCUUG-GC- -5'
18048 3' -53.9 NC_004680.1 + 22847 0.66 0.84841
Target:  5'- cCCGgggCGGACgCCGaCAaacuCGCCGAACCa -3'
miRNA:   3'- uGGCa--GUUUG-GGCaGU----GUGGCUUGGc -5'
18048 3' -53.9 NC_004680.1 + 22144 0.69 0.684066
Target:  5'- cGCCGcgcgcgCAGucuCCCGguuucggguugucguUCACGCCGAGCCu -3'
miRNA:   3'- -UGGCa-----GUUu--GGGC---------------AGUGUGGCUUGGc -5'
18048 3' -53.9 NC_004680.1 + 20752 0.66 0.84841
Target:  5'- cGCCGaUCGGGCCUGUUcCGCC--GCCa -3'
miRNA:   3'- -UGGC-AGUUUGGGCAGuGUGGcuUGGc -5'
18048 3' -53.9 NC_004680.1 + 20590 0.66 0.838932
Target:  5'- gGCCGUCAAAcuucuauCCCG--GCACCGAuuauCUGu -3'
miRNA:   3'- -UGGCAGUUU-------GGGCagUGUGGCUu---GGC- -5'
18048 3' -53.9 NC_004680.1 + 20101 0.66 0.800467
Target:  5'- gGuuGUCGGACCCGUCGgauacguacgaguuCACCacGCCu -3'
miRNA:   3'- -UggCAGUUUGGGCAGU--------------GUGGcuUGGc -5'
18048 3' -53.9 NC_004680.1 + 19917 0.68 0.721533
Target:  5'- -gCGUCAGAUCCGggUCaggaucaggcaaaGCAUCGGGCCGg -3'
miRNA:   3'- ugGCAGUUUGGGC--AG-------------UGUGGCUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 19596 0.71 0.538784
Target:  5'- cACCGgc-GGCgCCGUCAC-CCGGGCCa -3'
miRNA:   3'- -UGGCaguUUG-GGCAGUGuGGCUUGGc -5'
18048 3' -53.9 NC_004680.1 + 18950 0.66 0.830984
Target:  5'- uCgGUgAucCCCGcCACGCCGuAGCCGa -3'
miRNA:   3'- uGgCAgUuuGGGCaGUGUGGC-UUGGC- -5'
18048 3' -53.9 NC_004680.1 + 18447 0.67 0.783985
Target:  5'- uCCGgCAAGCCCGUCAacccacgacUGCUGAauaacACCGg -3'
miRNA:   3'- uGGCaGUUUGGGCAGU---------GUGGCU-----UGGC- -5'
18048 3' -53.9 NC_004680.1 + 17415 0.66 0.839805
Target:  5'- -aCGUCAccGACCCcgccugacguUCACACCGAaaauagaucgucGCCGg -3'
miRNA:   3'- ugGCAGU--UUGGGc---------AGUGUGGCU------------UGGC- -5'
18048 3' -53.9 NC_004680.1 + 17192 0.72 0.507328
Target:  5'- gACCGUguAACCgGaCACGCgGGGCCGc -3'
miRNA:   3'- -UGGCAguUUGGgCaGUGUGgCUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 17057 0.68 0.708784
Target:  5'- cGCCGccaacaCGAACCCGUCAgcggucgaguucacCACCGGcACCu -3'
miRNA:   3'- -UGGCa-----GUUUGGGCAGU--------------GUGGCU-UGGc -5'
18048 3' -53.9 NC_004680.1 + 16834 0.68 0.72259
Target:  5'- uCCGUCAAGuucaCCGUCGUAUCGAacgugGCCGg -3'
miRNA:   3'- uGGCAGUUUg---GGCAGUGUGGCU-----UGGC- -5'
18048 3' -53.9 NC_004680.1 + 15863 0.66 0.821958
Target:  5'- aGCCGUac-GCCuauuuCGUgGCGCCuGAGCCGg -3'
miRNA:   3'- -UGGCAguuUGG-----GCAgUGUGG-CUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 15199 0.67 0.774077
Target:  5'- uACCG-CAAACCCGcgguuucgacgaUgACACCG-ACCa -3'
miRNA:   3'- -UGGCaGUUUGGGC------------AgUGUGGCuUGGc -5'
18048 3' -53.9 NC_004680.1 + 15031 0.67 0.774077
Target:  5'- gGCUGcCAaAACuuGUCGCACaccguGAACCGg -3'
miRNA:   3'- -UGGCaGU-UUGggCAGUGUGg----CUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 12644 0.69 0.636167
Target:  5'- cGCCGUCcAugCCGaUCcCACCgGAGCCu -3'
miRNA:   3'- -UGGCAGuUugGGC-AGuGUGG-CUUGGc -5'
18048 3' -53.9 NC_004680.1 + 12254 0.68 0.732062
Target:  5'- cACCGUCGGaacggauACCUGggcggcaGCGCCGGACgGg -3'
miRNA:   3'- -UGGCAGUU-------UGGGCag-----UGUGGCUUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.