Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18048 | 3' | -53.9 | NC_004680.1 | + | 27961 | 0.68 | 0.72259 |
Target: 5'- aGCCuUCGAugCCGagcuUCGCGCCGAucgcGCCc -3' miRNA: 3'- -UGGcAGUUugGGC----AGUGUGGCU----UGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 16834 | 0.68 | 0.72259 |
Target: 5'- uCCGUCAAGuucaCCGUCGUAUCGAacgugGCCGg -3' miRNA: 3'- uGGCAGUUUg---GGCAGUGUGGCU-----UGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 23499 | 0.68 | 0.72259 |
Target: 5'- uGCCGUCAcggucaaacaGGCCCaUCAUgucguuGCCGAACgCGa -3' miRNA: 3'- -UGGCAGU----------UUGGGcAGUG------UGGCUUG-GC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 19917 | 0.68 | 0.721533 |
Target: 5'- -gCGUCAGAUCCGggUCaggaucaggcaaaGCAUCGGGCCGg -3' miRNA: 3'- ugGCAGUUUGGGC--AG-------------UGUGGCUUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 17057 | 0.68 | 0.708784 |
Target: 5'- cGCCGccaacaCGAACCCGUCAgcggucgaguucacCACCGGcACCu -3' miRNA: 3'- -UGGCa-----GUUUGGGCAGU--------------GUGGCU-UGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 44783 | 0.69 | 0.657999 |
Target: 5'- -aCGUCGAACucauacucgauuCCGUCGCGCUGuuCCGg -3' miRNA: 3'- ugGCAGUUUG------------GGCAGUGUGGCuuGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 12644 | 0.69 | 0.636167 |
Target: 5'- cGCCGUCcAugCCGaUCcCACCgGAGCCu -3' miRNA: 3'- -UGGCAGuUugGGC-AGuGUGG-CUUGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 25434 | 0.69 | 0.636167 |
Target: 5'- uACCGcCGAGCuuG--ACGCCGAACUGg -3' miRNA: 3'- -UGGCaGUUUGggCagUGUGGCUUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 15199 | 0.67 | 0.774077 |
Target: 5'- uACCG-CAAACCCGcgguuucgacgaUgACACCG-ACCa -3' miRNA: 3'- -UGGCaGUUUGGGC------------AgUGUGGCuUGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 15031 | 0.67 | 0.774077 |
Target: 5'- gGCUGcCAaAACuuGUCGCACaccguGAACCGg -3' miRNA: 3'- -UGGCaGU-UUGggCAGUGUGg----CUUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 18447 | 0.67 | 0.783985 |
Target: 5'- uCCGgCAAGCCCGUCAacccacgacUGCUGAauaacACCGg -3' miRNA: 3'- uGGCaGUUUGGGCAGU---------GUGGCU-----UGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 17415 | 0.66 | 0.839805 |
Target: 5'- -aCGUCAccGACCCcgccugacguUCACACCGAaaauagaucgucGCCGg -3' miRNA: 3'- ugGCAGU--UUGGGc---------AGUGUGGCU------------UGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 24144 | 0.66 | 0.830984 |
Target: 5'- cACCGUCuuGAAUcuucgCCGaCGuCACCGAACCa -3' miRNA: 3'- -UGGCAG--UUUG-----GGCaGU-GUGGCUUGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 45268 | 0.66 | 0.830984 |
Target: 5'- -aCGUUGGugUCGUCGCGgCGAgaGCCGc -3' miRNA: 3'- ugGCAGUUugGGCAGUGUgGCU--UGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 23864 | 0.66 | 0.830984 |
Target: 5'- cGCCGUCAcAUCgGUgACAUCG-GCCa -3' miRNA: 3'- -UGGCAGUuUGGgCAgUGUGGCuUGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 18950 | 0.66 | 0.830984 |
Target: 5'- uCgGUgAucCCCGcCACGCCGuAGCCGa -3' miRNA: 3'- uGgCAgUuuGGGCaGUGUGGC-UUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 10984 | 0.66 | 0.821958 |
Target: 5'- cGCCGUCGGGCUgGUC---CUGAAUCGg -3' miRNA: 3'- -UGGCAGUUUGGgCAGuguGGCUUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 1716 | 0.66 | 0.819211 |
Target: 5'- aGCCGUCGcaucucuccaccgcGACCCGUCAaACCcAGCa- -3' miRNA: 3'- -UGGCAGU--------------UUGGGCAGUgUGGcUUGgc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 7505 | 0.67 | 0.783985 |
Target: 5'- gGCCGUCG---UCGUCAUACUcgacaaGGACCGg -3' miRNA: 3'- -UGGCAGUuugGGCAGUGUGG------CUUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 598 | 0.67 | 0.783985 |
Target: 5'- gAUCGUCAcaGGCuCCGgugggCACACCGGcgcaGCCu -3' miRNA: 3'- -UGGCAGU--UUG-GGCa----GUGUGGCU----UGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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