miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18048 3' -53.9 NC_004680.1 + 36529 0.68 0.73311
Target:  5'- cACCGcucgCAAGCUCGUCGCugUcGAGuCCGa -3'
miRNA:   3'- -UGGCa---GUUUGGGCAGUGugG-CUU-GGC- -5'
18048 3' -53.9 NC_004680.1 + 15199 0.67 0.774077
Target:  5'- uACCG-CAAACCCGcgguuucgacgaUgACACCG-ACCa -3'
miRNA:   3'- -UGGCaGUUUGGGC------------AgUGUGGCuUGGc -5'
18048 3' -53.9 NC_004680.1 + 15031 0.67 0.774077
Target:  5'- gGCUGcCAaAACuuGUCGCACaccguGAACCGg -3'
miRNA:   3'- -UGGCaGU-UUGggCAGUGUGg----CUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 18447 0.67 0.783985
Target:  5'- uCCGgCAAGCCCGUCAacccacgacUGCUGAauaacACCGg -3'
miRNA:   3'- uGGCaGUUUGGGCAGU---------GUGGCU-----UGGC- -5'
18048 3' -53.9 NC_004680.1 + 598 0.67 0.783985
Target:  5'- gAUCGUCAcaGGCuCCGgugggCACACCGGcgcaGCCu -3'
miRNA:   3'- -UGGCAGU--UUG-GGCa----GUGUGGCU----UGGc -5'
18048 3' -53.9 NC_004680.1 + 7505 0.67 0.783985
Target:  5'- gGCCGUCG---UCGUCAUACUcgacaaGGACCGg -3'
miRNA:   3'- -UGGCAGUuugGGCAGUGUGG------CUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 55969 0.67 0.783985
Target:  5'- cGCCGaucCAAcgcuGCCCaGcCGCACCGaAACCGg -3'
miRNA:   3'- -UGGCa--GUU----UGGG-CaGUGUGGC-UUGGC- -5'
18048 3' -53.9 NC_004680.1 + 40144 0.67 0.783985
Target:  5'- gGCCGaCcuGCCCGUCAC-CCGcaacGCCc -3'
miRNA:   3'- -UGGCaGuuUGGGCAGUGuGGCu---UGGc -5'
18048 3' -53.9 NC_004680.1 + 50165 0.67 0.793738
Target:  5'- --gGUCG---CgGUCGCACCGGGCCGg -3'
miRNA:   3'- uggCAGUuugGgCAGUGUGGCUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 47154 0.67 0.793738
Target:  5'- gACCGUaCGAcucACCCcccaucgucGUCgACACgGAACCGg -3'
miRNA:   3'- -UGGCA-GUU---UGGG---------CAG-UGUGgCUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 20101 0.66 0.800467
Target:  5'- gGuuGUCGGACCCGUCGgauacguacgaguuCACCacGCCu -3'
miRNA:   3'- -UggCAGUUUGGGCAGU--------------GUGGcuUGGc -5'
18048 3' -53.9 NC_004680.1 + 57340 0.66 0.812735
Target:  5'- gGCCGgCGAACCUGaaacgCGuCACCGAACa- -3'
miRNA:   3'- -UGGCaGUUUGGGCa----GU-GUGGCUUGgc -5'
18048 3' -53.9 NC_004680.1 + 1716 0.66 0.819211
Target:  5'- aGCCGUCGcaucucuccaccgcGACCCGUCAaACCcAGCa- -3'
miRNA:   3'- -UGGCAGU--------------UUGGGCAGUgUGGcUUGgc -5'
18048 3' -53.9 NC_004680.1 + 42709 0.66 0.821958
Target:  5'- uGCaGUCGAACCgCGUUGCGCCGcaaguuccCCGg -3'
miRNA:   3'- -UGgCAGUUUGG-GCAGUGUGGCuu------GGC- -5'
18048 3' -53.9 NC_004680.1 + 15863 0.66 0.821958
Target:  5'- aGCCGUac-GCCuauuuCGUgGCGCCuGAGCCGg -3'
miRNA:   3'- -UGGCAguuUGG-----GCAgUGUGG-CUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 10984 0.66 0.821958
Target:  5'- cGCCGUCGGGCUgGUC---CUGAAUCGg -3'
miRNA:   3'- -UGGCAGUUUGGgCAGuguGGCUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 45268 0.66 0.830984
Target:  5'- -aCGUUGGugUCGUCGCGgCGAgaGCCGc -3'
miRNA:   3'- ugGCAGUUugGGCAGUGUgGCU--UGGC- -5'
18048 3' -53.9 NC_004680.1 + 23864 0.66 0.830984
Target:  5'- cGCCGUCAcAUCgGUgACAUCG-GCCa -3'
miRNA:   3'- -UGGCAGUuUGGgCAgUGUGGCuUGGc -5'
18048 3' -53.9 NC_004680.1 + 18950 0.66 0.830984
Target:  5'- uCgGUgAucCCCGcCACGCCGuAGCCGa -3'
miRNA:   3'- uGgCAgUuuGGGCaGUGUGGC-UUGGC- -5'
18048 3' -53.9 NC_004680.1 + 24144 0.66 0.830984
Target:  5'- cACCGUCuuGAAUcuucgCCGaCGuCACCGAACCa -3'
miRNA:   3'- -UGGCAG--UUUG-----GGCaGU-GUGGCUUGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.