miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18048 3' -53.9 NC_004680.1 + 948 1.02 0.005913
Target:  5'- -gCGUCAAACCCGUCACACCGAACCGg -3'
miRNA:   3'- ugGCAGUUUGGGCAGUGUGGCUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 52060 0.75 0.331425
Target:  5'- aACUGUgcgaAGACCCGUCGCA-CGGACCGc -3'
miRNA:   3'- -UGGCAg---UUUGGGCAGUGUgGCUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 40913 0.74 0.409032
Target:  5'- uACCGUCGgcGACCCG-CACACCGugguagucgcACCa -3'
miRNA:   3'- -UGGCAGU--UUGGGCaGUGUGGCu---------UGGc -5'
18048 3' -53.9 NC_004680.1 + 57018 0.73 0.427755
Target:  5'- uGCCcuuGUCGAAUCCGUCGCGCCacuucuCCGg -3'
miRNA:   3'- -UGG---CAGUUUGGGCAGUGUGGcuu---GGC- -5'
18048 3' -53.9 NC_004680.1 + 47857 0.73 0.456763
Target:  5'- cGCCGgagucuCCCGuUCGCACCGAucccGCCGg -3'
miRNA:   3'- -UGGCaguuu-GGGC-AGUGUGGCU----UGGC- -5'
18048 3' -53.9 NC_004680.1 + 17192 0.72 0.507328
Target:  5'- gACCGUguAACCgGaCACGCgGGGCCGc -3'
miRNA:   3'- -UGGCAguUUGGgCaGUGUGgCUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 19596 0.71 0.538784
Target:  5'- cACCGgc-GGCgCCGUCAC-CCGGGCCa -3'
miRNA:   3'- -UGGCaguUUG-GGCAGUGuGGCUUGGc -5'
18048 3' -53.9 NC_004680.1 + 25434 0.69 0.636167
Target:  5'- uACCGcCGAGCuuG--ACGCCGAACUGg -3'
miRNA:   3'- -UGGCaGUUUGggCagUGUGGCUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 12644 0.69 0.636167
Target:  5'- cGCCGUCcAugCCGaUCcCACCgGAGCCu -3'
miRNA:   3'- -UGGCAGuUugGGC-AGuGUGG-CUUGGc -5'
18048 3' -53.9 NC_004680.1 + 44783 0.69 0.657999
Target:  5'- -aCGUCGAACucauacucgauuCCGUCGCGCUGuuCCGg -3'
miRNA:   3'- ugGCAGUUUG------------GGCAGUGUGGCuuGGC- -5'
18048 3' -53.9 NC_004680.1 + 11750 0.69 0.679737
Target:  5'- gACCGggguUCuuACCCGUC-UGCCGGugCGg -3'
miRNA:   3'- -UGGC----AGuuUGGGCAGuGUGGCUugGC- -5'
18048 3' -53.9 NC_004680.1 + 22144 0.69 0.684066
Target:  5'- cGCCGcgcgcgCAGucuCCCGguuucggguugucguUCACGCCGAGCCu -3'
miRNA:   3'- -UGGCa-----GUUu--GGGC---------------AGUGUGGCUUGGc -5'
18048 3' -53.9 NC_004680.1 + 49115 0.69 0.690544
Target:  5'- aACCGuUCAAGCCCGgCACuCUaAGCCGc -3'
miRNA:   3'- -UGGC-AGUUUGGGCaGUGuGGcUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 17057 0.68 0.708784
Target:  5'- cGCCGccaacaCGAACCCGUCAgcggucgaguucacCACCGGcACCu -3'
miRNA:   3'- -UGGCa-----GUUUGGGCAGU--------------GUGGCU-UGGc -5'
18048 3' -53.9 NC_004680.1 + 19917 0.68 0.721533
Target:  5'- -gCGUCAGAUCCGggUCaggaucaggcaaaGCAUCGGGCCGg -3'
miRNA:   3'- ugGCAGUUUGGGC--AG-------------UGUGGCUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 23499 0.68 0.72259
Target:  5'- uGCCGUCAcggucaaacaGGCCCaUCAUgucguuGCCGAACgCGa -3'
miRNA:   3'- -UGGCAGU----------UUGGGcAGUG------UGGCUUG-GC- -5'
18048 3' -53.9 NC_004680.1 + 16834 0.68 0.72259
Target:  5'- uCCGUCAAGuucaCCGUCGUAUCGAacgugGCCGg -3'
miRNA:   3'- uGGCAGUUUg---GGCAGUGUGGCU-----UGGC- -5'
18048 3' -53.9 NC_004680.1 + 27961 0.68 0.72259
Target:  5'- aGCCuUCGAugCCGagcuUCGCGCCGAucgcGCCc -3'
miRNA:   3'- -UGGcAGUUugGGC----AGUGUGGCU----UGGc -5'
18048 3' -53.9 NC_004680.1 + 6380 0.68 0.732062
Target:  5'- uGCCGUCAGcgauaccGCCUG-CGaugaaACCGAACCc -3'
miRNA:   3'- -UGGCAGUU-------UGGGCaGUg----UGGCUUGGc -5'
18048 3' -53.9 NC_004680.1 + 12254 0.68 0.732062
Target:  5'- cACCGUCGGaacggauACCUGggcggcaGCGCCGGACgGg -3'
miRNA:   3'- -UGGCAGUU-------UGGGCag-----UGUGGCUUGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.