miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18048 3' -53.9 NC_004680.1 + 598 0.67 0.783985
Target:  5'- gAUCGUCAcaGGCuCCGgugggCACACCGGcgcaGCCu -3'
miRNA:   3'- -UGGCAGU--UUG-GGCa----GUGUGGCU----UGGc -5'
18048 3' -53.9 NC_004680.1 + 948 1.02 0.005913
Target:  5'- -gCGUCAAACCCGUCACACCGAACCGg -3'
miRNA:   3'- ugGCAGUUUGGGCAGUGUGGCUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 1716 0.66 0.819211
Target:  5'- aGCCGUCGcaucucuccaccgcGACCCGUCAaACCcAGCa- -3'
miRNA:   3'- -UGGCAGU--------------UUGGGCAGUgUGGcUUGgc -5'
18048 3' -53.9 NC_004680.1 + 6380 0.68 0.732062
Target:  5'- uGCCGUCAGcgauaccGCCUG-CGaugaaACCGAACCc -3'
miRNA:   3'- -UGGCAGUU-------UGGGCaGUg----UGGCUUGGc -5'
18048 3' -53.9 NC_004680.1 + 7505 0.67 0.783985
Target:  5'- gGCCGUCG---UCGUCAUACUcgacaaGGACCGg -3'
miRNA:   3'- -UGGCAGUuugGGCAGUGUGG------CUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 10984 0.66 0.821958
Target:  5'- cGCCGUCGGGCUgGUC---CUGAAUCGg -3'
miRNA:   3'- -UGGCAGUUUGGgCAGuguGGCUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 11750 0.69 0.679737
Target:  5'- gACCGggguUCuuACCCGUC-UGCCGGugCGg -3'
miRNA:   3'- -UGGC----AGuuUGGGCAGuGUGGCUugGC- -5'
18048 3' -53.9 NC_004680.1 + 12254 0.68 0.732062
Target:  5'- cACCGUCGGaacggauACCUGggcggcaGCGCCGGACgGg -3'
miRNA:   3'- -UGGCAGUU-------UGGGCag-----UGUGGCUUGgC- -5'
18048 3' -53.9 NC_004680.1 + 12644 0.69 0.636167
Target:  5'- cGCCGUCcAugCCGaUCcCACCgGAGCCu -3'
miRNA:   3'- -UGGCAGuUugGGC-AGuGUGG-CUUGGc -5'
18048 3' -53.9 NC_004680.1 + 15031 0.67 0.774077
Target:  5'- gGCUGcCAaAACuuGUCGCACaccguGAACCGg -3'
miRNA:   3'- -UGGCaGU-UUGggCAGUGUGg----CUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 15199 0.67 0.774077
Target:  5'- uACCG-CAAACCCGcgguuucgacgaUgACACCG-ACCa -3'
miRNA:   3'- -UGGCaGUUUGGGC------------AgUGUGGCuUGGc -5'
18048 3' -53.9 NC_004680.1 + 15863 0.66 0.821958
Target:  5'- aGCCGUac-GCCuauuuCGUgGCGCCuGAGCCGg -3'
miRNA:   3'- -UGGCAguuUGG-----GCAgUGUGG-CUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 16834 0.68 0.72259
Target:  5'- uCCGUCAAGuucaCCGUCGUAUCGAacgugGCCGg -3'
miRNA:   3'- uGGCAGUUUg---GGCAGUGUGGCU-----UGGC- -5'
18048 3' -53.9 NC_004680.1 + 17057 0.68 0.708784
Target:  5'- cGCCGccaacaCGAACCCGUCAgcggucgaguucacCACCGGcACCu -3'
miRNA:   3'- -UGGCa-----GUUUGGGCAGU--------------GUGGCU-UGGc -5'
18048 3' -53.9 NC_004680.1 + 17192 0.72 0.507328
Target:  5'- gACCGUguAACCgGaCACGCgGGGCCGc -3'
miRNA:   3'- -UGGCAguUUGGgCaGUGUGgCUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 17415 0.66 0.839805
Target:  5'- -aCGUCAccGACCCcgccugacguUCACACCGAaaauagaucgucGCCGg -3'
miRNA:   3'- ugGCAGU--UUGGGc---------AGUGUGGCU------------UGGC- -5'
18048 3' -53.9 NC_004680.1 + 18447 0.67 0.783985
Target:  5'- uCCGgCAAGCCCGUCAacccacgacUGCUGAauaacACCGg -3'
miRNA:   3'- uGGCaGUUUGGGCAGU---------GUGGCU-----UGGC- -5'
18048 3' -53.9 NC_004680.1 + 18950 0.66 0.830984
Target:  5'- uCgGUgAucCCCGcCACGCCGuAGCCGa -3'
miRNA:   3'- uGgCAgUuuGGGCaGUGUGGC-UUGGC- -5'
18048 3' -53.9 NC_004680.1 + 19596 0.71 0.538784
Target:  5'- cACCGgc-GGCgCCGUCAC-CCGGGCCa -3'
miRNA:   3'- -UGGCaguUUG-GGCAGUGuGGCUUGGc -5'
18048 3' -53.9 NC_004680.1 + 19917 0.68 0.721533
Target:  5'- -gCGUCAGAUCCGggUCaggaucaggcaaaGCAUCGGGCCGg -3'
miRNA:   3'- ugGCAGUUUGGGC--AG-------------UGUGGCUUGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.