miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18048 3' -53.9 NC_004680.1 + 20101 0.66 0.800467
Target:  5'- gGuuGUCGGACCCGUCGgauacguacgaguuCACCacGCCu -3'
miRNA:   3'- -UggCAGUUUGGGCAGU--------------GUGGcuUGGc -5'
18048 3' -53.9 NC_004680.1 + 20590 0.66 0.838932
Target:  5'- gGCCGUCAAAcuucuauCCCG--GCACCGAuuauCUGu -3'
miRNA:   3'- -UGGCAGUUU-------GGGCagUGUGGCUu---GGC- -5'
18048 3' -53.9 NC_004680.1 + 20752 0.66 0.84841
Target:  5'- cGCCGaUCGGGCCUGUUcCGCC--GCCa -3'
miRNA:   3'- -UGGC-AGUUUGGGCAGuGUGGcuUGGc -5'
18048 3' -53.9 NC_004680.1 + 22144 0.69 0.684066
Target:  5'- cGCCGcgcgcgCAGucuCCCGguuucggguugucguUCACGCCGAGCCu -3'
miRNA:   3'- -UGGCa-----GUUu--GGGC---------------AGUGUGGCUUGGc -5'
18048 3' -53.9 NC_004680.1 + 22847 0.66 0.84841
Target:  5'- cCCGgggCGGACgCCGaCAaacuCGCCGAACCa -3'
miRNA:   3'- uGGCa--GUUUG-GGCaGU----GUGGCUUGGc -5'
18048 3' -53.9 NC_004680.1 + 23499 0.68 0.72259
Target:  5'- uGCCGUCAcggucaaacaGGCCCaUCAUgucguuGCCGAACgCGa -3'
miRNA:   3'- -UGGCAGU----------UUGGGcAGUG------UGGCUUG-GC- -5'
18048 3' -53.9 NC_004680.1 + 23864 0.66 0.830984
Target:  5'- cGCCGUCAcAUCgGUgACAUCG-GCCa -3'
miRNA:   3'- -UGGCAGUuUGGgCAgUGUGGCuUGGc -5'
18048 3' -53.9 NC_004680.1 + 24144 0.66 0.830984
Target:  5'- cACCGUCuuGAAUcuucgCCGaCGuCACCGAACCa -3'
miRNA:   3'- -UGGCAG--UUUG-----GGCaGU-GUGGCUUGGc -5'
18048 3' -53.9 NC_004680.1 + 25434 0.69 0.636167
Target:  5'- uACCGcCGAGCuuG--ACGCCGAACUGg -3'
miRNA:   3'- -UGGCaGUUUGggCagUGUGGCUUGGC- -5'
18048 3' -53.9 NC_004680.1 + 27961 0.68 0.72259
Target:  5'- aGCCuUCGAugCCGagcuUCGCGCCGAucgcGCCc -3'
miRNA:   3'- -UGGcAGUUugGGC----AGUGUGGCU----UGGc -5'
18048 3' -53.9 NC_004680.1 + 31625 0.66 0.845851
Target:  5'- cGCCGUCGgcgaacaccucuccAACCUGUUucccguccgGCACUGGcacACCGg -3'
miRNA:   3'- -UGGCAGU--------------UUGGGCAG---------UGUGGCU---UGGC- -5'
18048 3' -53.9 NC_004680.1 + 36529 0.68 0.73311
Target:  5'- cACCGcucgCAAGCUCGUCGCugUcGAGuCCGa -3'
miRNA:   3'- -UGGCa---GUUUGGGCAGUGugG-CUU-GGC- -5'
18048 3' -53.9 NC_004680.1 + 40144 0.67 0.783985
Target:  5'- gGCCGaCcuGCCCGUCAC-CCGcaacGCCc -3'
miRNA:   3'- -UGGCaGuuUGGGCAGUGuGGCu---UGGc -5'
18048 3' -53.9 NC_004680.1 + 40913 0.74 0.409032
Target:  5'- uACCGUCGgcGACCCG-CACACCGugguagucgcACCa -3'
miRNA:   3'- -UGGCAGU--UUGGGCaGUGUGGCu---------UGGc -5'
18048 3' -53.9 NC_004680.1 + 41742 0.66 0.839805
Target:  5'- cACCGcCGAccccGCCCGcCGCaucuGCUGGACCu -3'
miRNA:   3'- -UGGCaGUU----UGGGCaGUG----UGGCUUGGc -5'
18048 3' -53.9 NC_004680.1 + 42709 0.66 0.821958
Target:  5'- uGCaGUCGAACCgCGUUGCGCCGcaaguuccCCGg -3'
miRNA:   3'- -UGgCAGUUUGG-GCAGUGUGGCuu------GGC- -5'
18048 3' -53.9 NC_004680.1 + 44783 0.69 0.657999
Target:  5'- -aCGUCGAACucauacucgauuCCGUCGCGCUGuuCCGg -3'
miRNA:   3'- ugGCAGUUUG------------GGCAGUGUGGCuuGGC- -5'
18048 3' -53.9 NC_004680.1 + 45268 0.66 0.830984
Target:  5'- -aCGUUGGugUCGUCGCGgCGAgaGCCGc -3'
miRNA:   3'- ugGCAGUUugGGCAGUGUgGCU--UGGC- -5'
18048 3' -53.9 NC_004680.1 + 46025 0.66 0.84841
Target:  5'- gGCCGc----CCCGUCAcCGCCGAauucaccaccACCGa -3'
miRNA:   3'- -UGGCaguuuGGGCAGU-GUGGCU----------UGGC- -5'
18048 3' -53.9 NC_004680.1 + 47154 0.67 0.793738
Target:  5'- gACCGUaCGAcucACCCcccaucgucGUCgACACgGAACCGg -3'
miRNA:   3'- -UGGCA-GUU---UGGG---------CAG-UGUGgCUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.