Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18048 | 3' | -53.9 | NC_004680.1 | + | 52060 | 0.75 | 0.331425 |
Target: 5'- aACUGUgcgaAGACCCGUCGCA-CGGACCGc -3' miRNA: 3'- -UGGCAg---UUUGGGCAGUGUgGCUUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 46025 | 0.66 | 0.84841 |
Target: 5'- gGCCGc----CCCGUCAcCGCCGAauucaccaccACCGa -3' miRNA: 3'- -UGGCaguuuGGGCAGU-GUGGCU----------UGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 20752 | 0.66 | 0.84841 |
Target: 5'- cGCCGaUCGGGCCUGUUcCGCC--GCCa -3' miRNA: 3'- -UGGC-AGUUUGGGCAGuGUGGcuUGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 31625 | 0.66 | 0.845851 |
Target: 5'- cGCCGUCGgcgaacaccucuccAACCUGUUucccguccgGCACUGGcacACCGg -3' miRNA: 3'- -UGGCAGU--------------UUGGGCAG---------UGUGGCU---UGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 41742 | 0.66 | 0.839805 |
Target: 5'- cACCGcCGAccccGCCCGcCGCaucuGCUGGACCu -3' miRNA: 3'- -UGGCaGUU----UGGGCaGUG----UGGCUUGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 20590 | 0.66 | 0.838932 |
Target: 5'- gGCCGUCAAAcuucuauCCCG--GCACCGAuuauCUGu -3' miRNA: 3'- -UGGCAGUUU-------GGGCagUGUGGCUu---GGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 15863 | 0.66 | 0.821958 |
Target: 5'- aGCCGUac-GCCuauuuCGUgGCGCCuGAGCCGg -3' miRNA: 3'- -UGGCAguuUGG-----GCAgUGUGG-CUUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 42709 | 0.66 | 0.821958 |
Target: 5'- uGCaGUCGAACCgCGUUGCGCCGcaaguuccCCGg -3' miRNA: 3'- -UGgCAGUUUGG-GCAGUGUGGCuu------GGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 57340 | 0.66 | 0.812735 |
Target: 5'- gGCCGgCGAACCUGaaacgCGuCACCGAACa- -3' miRNA: 3'- -UGGCaGUUUGGGCa----GU-GUGGCUUGgc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 20101 | 0.66 | 0.800467 |
Target: 5'- gGuuGUCGGACCCGUCGgauacguacgaguuCACCacGCCu -3' miRNA: 3'- -UggCAGUUUGGGCAGU--------------GUGGcuUGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 47154 | 0.67 | 0.793738 |
Target: 5'- gACCGUaCGAcucACCCcccaucgucGUCgACACgGAACCGg -3' miRNA: 3'- -UGGCA-GUU---UGGG---------CAG-UGUGgCUUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 11750 | 0.69 | 0.679737 |
Target: 5'- gACCGggguUCuuACCCGUC-UGCCGGugCGg -3' miRNA: 3'- -UGGC----AGuuUGGGCAGuGUGGCUugGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 22144 | 0.69 | 0.684066 |
Target: 5'- cGCCGcgcgcgCAGucuCCCGguuucggguugucguUCACGCCGAGCCu -3' miRNA: 3'- -UGGCa-----GUUu--GGGC---------------AGUGUGGCUUGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 49115 | 0.69 | 0.690544 |
Target: 5'- aACCGuUCAAGCCCGgCACuCUaAGCCGc -3' miRNA: 3'- -UGGC-AGUUUGGGCaGUGuGGcUUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 36529 | 0.68 | 0.73311 |
Target: 5'- cACCGcucgCAAGCUCGUCGCugUcGAGuCCGa -3' miRNA: 3'- -UGGCa---GUUUGGGCAGUGugG-CUU-GGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 40144 | 0.67 | 0.783985 |
Target: 5'- gGCCGaCcuGCCCGUCAC-CCGcaacGCCc -3' miRNA: 3'- -UGGCaGuuUGGGCAGUGuGGCu---UGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 55969 | 0.67 | 0.783985 |
Target: 5'- cGCCGaucCAAcgcuGCCCaGcCGCACCGaAACCGg -3' miRNA: 3'- -UGGCa--GUU----UGGG-CaGUGUGGC-UUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 50165 | 0.67 | 0.793738 |
Target: 5'- --gGUCG---CgGUCGCACCGGGCCGg -3' miRNA: 3'- uggCAGUuugGgCAGUGUGGCUUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 948 | 1.02 | 0.005913 |
Target: 5'- -gCGUCAAACCCGUCACACCGAACCGg -3' miRNA: 3'- ugGCAGUUUGGGCAGUGUGGCUUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 17415 | 0.66 | 0.839805 |
Target: 5'- -aCGUCAccGACCCcgccugacguUCACACCGAaaauagaucgucGCCGg -3' miRNA: 3'- ugGCAGU--UUGGGc---------AGUGUGGCU------------UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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