Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18048 | 3' | -53.9 | NC_004680.1 | + | 17415 | 0.66 | 0.839805 |
Target: 5'- -aCGUCAccGACCCcgccugacguUCACACCGAaaauagaucgucGCCGg -3' miRNA: 3'- ugGCAGU--UUGGGc---------AGUGUGGCU------------UGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 17192 | 0.72 | 0.507328 |
Target: 5'- gACCGUguAACCgGaCACGCgGGGCCGc -3' miRNA: 3'- -UGGCAguUUGGgCaGUGUGgCUUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 47857 | 0.73 | 0.456763 |
Target: 5'- cGCCGgagucuCCCGuUCGCACCGAucccGCCGg -3' miRNA: 3'- -UGGCaguuu-GGGC-AGUGUGGCU----UGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 23499 | 0.68 | 0.72259 |
Target: 5'- uGCCGUCAcggucaaacaGGCCCaUCAUgucguuGCCGAACgCGa -3' miRNA: 3'- -UGGCAGU----------UUGGGcAGUG------UGGCUUG-GC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 57018 | 0.73 | 0.427755 |
Target: 5'- uGCCcuuGUCGAAUCCGUCGCGCCacuucuCCGg -3' miRNA: 3'- -UGG---CAGUUUGGGCAGUGUGGcuu---GGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 19596 | 0.71 | 0.538784 |
Target: 5'- cACCGgc-GGCgCCGUCAC-CCGGGCCa -3' miRNA: 3'- -UGGCaguUUG-GGCAGUGuGGCUUGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 22847 | 0.66 | 0.84841 |
Target: 5'- cCCGgggCGGACgCCGaCAaacuCGCCGAACCa -3' miRNA: 3'- uGGCa--GUUUG-GGCaGU----GUGGCUUGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 40913 | 0.74 | 0.409032 |
Target: 5'- uACCGUCGgcGACCCG-CACACCGugguagucgcACCa -3' miRNA: 3'- -UGGCAGU--UUGGGCaGUGUGGCu---------UGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 948 | 1.02 | 0.005913 |
Target: 5'- -gCGUCAAACCCGUCACACCGAACCGg -3' miRNA: 3'- ugGCAGUUUGGGCAGUGUGGCUUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 20590 | 0.66 | 0.838932 |
Target: 5'- gGCCGUCAAAcuucuauCCCG--GCACCGAuuauCUGu -3' miRNA: 3'- -UGGCAGUUU-------GGGCagUGUGGCUu---GGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 22144 | 0.69 | 0.684066 |
Target: 5'- cGCCGcgcgcgCAGucuCCCGguuucggguugucguUCACGCCGAGCCu -3' miRNA: 3'- -UGGCa-----GUUu--GGGC---------------AGUGUGGCUUGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 46025 | 0.66 | 0.84841 |
Target: 5'- gGCCGc----CCCGUCAcCGCCGAauucaccaccACCGa -3' miRNA: 3'- -UGGCaguuuGGGCAGU-GUGGCU----------UGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 36529 | 0.68 | 0.73311 |
Target: 5'- cACCGcucgCAAGCUCGUCGCugUcGAGuCCGa -3' miRNA: 3'- -UGGCa---GUUUGGGCAGUGugG-CUU-GGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 40144 | 0.67 | 0.783985 |
Target: 5'- gGCCGaCcuGCCCGUCAC-CCGcaacGCCc -3' miRNA: 3'- -UGGCaGuuUGGGCAGUGuGGCu---UGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 55969 | 0.67 | 0.783985 |
Target: 5'- cGCCGaucCAAcgcuGCCCaGcCGCACCGaAACCGg -3' miRNA: 3'- -UGGCa--GUU----UGGG-CaGUGUGGC-UUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 47154 | 0.67 | 0.793738 |
Target: 5'- gACCGUaCGAcucACCCcccaucgucGUCgACACgGAACCGg -3' miRNA: 3'- -UGGCA-GUU---UGGG---------CAG-UGUGgCUUGGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 41742 | 0.66 | 0.839805 |
Target: 5'- cACCGcCGAccccGCCCGcCGCaucuGCUGGACCu -3' miRNA: 3'- -UGGCaGUU----UGGGCaGUG----UGGCUUGGc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 57340 | 0.66 | 0.812735 |
Target: 5'- gGCCGgCGAACCUGaaacgCGuCACCGAACa- -3' miRNA: 3'- -UGGCaGUUUGGGCa----GU-GUGGCUUGgc -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 42709 | 0.66 | 0.821958 |
Target: 5'- uGCaGUCGAACCgCGUUGCGCCGcaaguuccCCGg -3' miRNA: 3'- -UGgCAGUUUGG-GCAGUGUGGCuu------GGC- -5' |
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18048 | 3' | -53.9 | NC_004680.1 | + | 15863 | 0.66 | 0.821958 |
Target: 5'- aGCCGUac-GCCuauuuCGUgGCGCCuGAGCCGg -3' miRNA: 3'- -UGGCAguuUGG-----GCAgUGUGG-CUUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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