Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18049 | 3' | -53.1 | NC_004680.1 | + | 1153 | 1.13 | 0.00096 |
Target: 5'- cACAGCAACAGCGAACCCAUCCUCACCa -3' miRNA: 3'- -UGUCGUUGUCGCUUGGGUAGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 2937 | 0.81 | 0.141624 |
Target: 5'- cCGGCGGCGGCGAACCgGUCacuacagcaUCACCa -3' miRNA: 3'- uGUCGUUGUCGCUUGGgUAGg--------AGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 14428 | 0.81 | 0.148537 |
Target: 5'- uCGGCAGCAGCGGACCaaacuccacauacuCAUCCgCGCCg -3' miRNA: 3'- uGUCGUUGUCGCUUGG--------------GUAGGaGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 27270 | 0.8 | 0.162387 |
Target: 5'- gGCGGCGGCGGCGAcgcugccGCCgAgaaCCUCGCCa -3' miRNA: 3'- -UGUCGUUGUCGCU-------UGGgUa--GGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 51603 | 0.8 | 0.167411 |
Target: 5'- gGCGGCGugcGCcuuGGCGAuccGCUCAUCCUCGCCg -3' miRNA: 3'- -UGUCGU---UG---UCGCU---UGGGUAGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 44219 | 0.76 | 0.298868 |
Target: 5'- cGCAGCAGCAGCGAgaagagcggcaGCCaguucgcgggCCUCAUCg -3' miRNA: 3'- -UGUCGUUGUCGCU-----------UGGgua-------GGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 41429 | 0.76 | 0.315848 |
Target: 5'- -gAGuCGACAGCGAACgcgacgCCAUCgUCACCg -3' miRNA: 3'- ugUC-GUUGUCGCUUG------GGUAGgAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 9697 | 0.75 | 0.331091 |
Target: 5'- cGCAGCAGCAGCuu-CCUuggugacGUUCUCGCCg -3' miRNA: 3'- -UGUCGUUGUCGcuuGGG-------UAGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 56238 | 0.73 | 0.440401 |
Target: 5'- cCAGCcGCGuCGAAguuCUCAUCCUCACCg -3' miRNA: 3'- uGUCGuUGUcGCUU---GGGUAGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 8226 | 0.73 | 0.465432 |
Target: 5'- uACAGCAGCAGCaacugguacuccgccGAAUCCGcguccagcagcggacCCUCACCa -3' miRNA: 3'- -UGUCGUUGUCG---------------CUUGGGUa--------------GGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 34696 | 0.72 | 0.470527 |
Target: 5'- gACGGCGagcACAGCGAGCgCGgugaCCaUCACCu -3' miRNA: 3'- -UGUCGU---UGUCGCUUGgGUa---GG-AGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 14510 | 0.72 | 0.480801 |
Target: 5'- uGCGGCGACGGCGGcACagacgucaaAUCCUgCACCa -3' miRNA: 3'- -UGUCGUUGUCGCU-UGgg-------UAGGA-GUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 43637 | 0.72 | 0.491182 |
Target: 5'- aGCAGCGGCAGCGuuCCCggCC--GCCc -3' miRNA: 3'- -UGUCGUUGUCGCuuGGGuaGGagUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 46938 | 0.72 | 0.500614 |
Target: 5'- aACAGCAuCAGCGGgugaaucACCCcaGUCUUgGCCa -3' miRNA: 3'- -UGUCGUuGUCGCU-------UGGG--UAGGAgUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 22761 | 0.72 | 0.512248 |
Target: 5'- gGCGGCGACGGCccccACCCAcCCgaaGCCg -3' miRNA: 3'- -UGUCGUUGUCGcu--UGGGUaGGag-UGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 27219 | 0.71 | 0.52292 |
Target: 5'- aACAGCGcccGCAGCGGcaaGCCCAccauguuccugaUCCaCACCc -3' miRNA: 3'- -UGUCGU---UGUCGCU---UGGGU------------AGGaGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 49865 | 0.71 | 0.533677 |
Target: 5'- cCAGC-GCAGCGAGgaUGUCUUCGCCa -3' miRNA: 3'- uGUCGuUGUCGCUUggGUAGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 27429 | 0.71 | 0.555416 |
Target: 5'- aACAGCAuCAGCaucAACCUGUgCUUCGCCg -3' miRNA: 3'- -UGUCGUuGUCGc--UUGGGUA-GGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 8774 | 0.7 | 0.574095 |
Target: 5'- gACGGCAACgagaugguccugccGGCGGagACCCGUCCcggCGCg -3' miRNA: 3'- -UGUCGUUG--------------UCGCU--UGGGUAGGa--GUGg -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 55435 | 0.7 | 0.577407 |
Target: 5'- -aAGCAcucgccGCGGCGAucACCCAaaacuaugugaUCCUCACa -3' miRNA: 3'- ugUCGU------UGUCGCU--UGGGU-----------AGGAGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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