Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18049 | 3' | -53.1 | NC_004680.1 | + | 41429 | 0.76 | 0.315848 |
Target: 5'- -gAGuCGACAGCGAACgcgacgCCAUCgUCACCg -3' miRNA: 3'- ugUC-GUUGUCGCUUG------GGUAGgAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 17786 | 0.67 | 0.794125 |
Target: 5'- uGCGGCGcaguUGGUGAACaUCAUCCUugCGCCg -3' miRNA: 3'- -UGUCGUu---GUCGCUUG-GGUAGGA--GUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 29931 | 0.67 | 0.784165 |
Target: 5'- uGCAGUAcgaACGGUG-ACCCGcaugCCgcgCACCa -3' miRNA: 3'- -UGUCGU---UGUCGCuUGGGUa---GGa--GUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 56802 | 0.67 | 0.784165 |
Target: 5'- uGCAGCAcgcccuCAGCcuGAACCCcaCCggCACCg -3' miRNA: 3'- -UGUCGUu-----GUCG--CUUGGGuaGGa-GUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 41574 | 0.67 | 0.774042 |
Target: 5'- cGCAGaauCGGUGuacuGCCCGcagcaCCUCACCa -3' miRNA: 3'- -UGUCguuGUCGCu---UGGGUa----GGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 4270 | 0.67 | 0.774042 |
Target: 5'- cGCgAGCA-UGGCGAgguuggGCCgGUCCUCGCa -3' miRNA: 3'- -UG-UCGUuGUCGCU------UGGgUAGGAGUGg -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 18578 | 0.67 | 0.753356 |
Target: 5'- aACAGCAucguCGGUGGGCCUGguaggCCUUcCCg -3' miRNA: 3'- -UGUCGUu---GUCGCUUGGGUa----GGAGuGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 19457 | 0.68 | 0.732161 |
Target: 5'- -gAGCAuuuCGGCGAcaACgCCAUCaUCACCc -3' miRNA: 3'- ugUCGUu--GUCGCU--UG-GGUAGgAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 26915 | 0.68 | 0.721402 |
Target: 5'- aGCAGCAacccggacccaACGGCGAACCCuggggggCa-CACCc -3' miRNA: 3'- -UGUCGU-----------UGUCGCUUGGGua-----GgaGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 41333 | 0.68 | 0.710553 |
Target: 5'- cCGGCAuCAuCGGcCCCggCCUCGCCg -3' miRNA: 3'- uGUCGUuGUcGCUuGGGuaGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 42602 | 0.68 | 0.709463 |
Target: 5'- uCAGCcGCGGCGAagcccacaACCCcaucccugaacauGUCCUgGCCc -3' miRNA: 3'- uGUCGuUGUCGCU--------UGGG-------------UAGGAgUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 8624 | 0.69 | 0.677576 |
Target: 5'- gACGGCAGCAccauGaCGAuCCCc-CCUCACCc -3' miRNA: 3'- -UGUCGUUGU----C-GCUuGGGuaGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 55435 | 0.7 | 0.577407 |
Target: 5'- -aAGCAcucgccGCGGCGAucACCCAaaacuaugugaUCCUCACa -3' miRNA: 3'- ugUCGU------UGUCGCU--UGGGU-----------AGGAGUGg -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 8774 | 0.7 | 0.574095 |
Target: 5'- gACGGCAACgagaugguccugccGGCGGagACCCGUCCcggCGCg -3' miRNA: 3'- -UGUCGUUG--------------UCGCU--UGGGUAGGa--GUGg -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 27429 | 0.71 | 0.555416 |
Target: 5'- aACAGCAuCAGCaucAACCUGUgCUUCGCCg -3' miRNA: 3'- -UGUCGUuGUCGc--UUGGGUA-GGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 27219 | 0.71 | 0.52292 |
Target: 5'- aACAGCGcccGCAGCGGcaaGCCCAccauguuccugaUCCaCACCc -3' miRNA: 3'- -UGUCGU---UGUCGCU---UGGGU------------AGGaGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 46938 | 0.72 | 0.500614 |
Target: 5'- aACAGCAuCAGCGGgugaaucACCCcaGUCUUgGCCa -3' miRNA: 3'- -UGUCGUuGUCGCU-------UGGG--UAGGAgUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 34696 | 0.72 | 0.470527 |
Target: 5'- gACGGCGagcACAGCGAGCgCGgugaCCaUCACCu -3' miRNA: 3'- -UGUCGU---UGUCGCUUGgGUa---GG-AGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 56238 | 0.73 | 0.440401 |
Target: 5'- cCAGCcGCGuCGAAguuCUCAUCCUCACCg -3' miRNA: 3'- uGUCGuUGUcGCUU---GGGUAGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 27270 | 0.8 | 0.162387 |
Target: 5'- gGCGGCGGCGGCGAcgcugccGCCgAgaaCCUCGCCa -3' miRNA: 3'- -UGUCGUUGUCGCU-------UGGgUa--GGAGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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