miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18049 3' -53.1 NC_004680.1 + 50168 0.67 0.794125
Target:  5'- cGCGGUcGCAcCGGGCCgGUCCU-ACCg -3'
miRNA:   3'- -UGUCGuUGUcGCUUGGgUAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 26915 0.68 0.721402
Target:  5'- aGCAGCAacccggacccaACGGCGAACCCuggggggCa-CACCc -3'
miRNA:   3'- -UGUCGU-----------UGUCGCUUGGGua-----GgaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 19457 0.68 0.732161
Target:  5'- -gAGCAuuuCGGCGAcaACgCCAUCaUCACCc -3'
miRNA:   3'- ugUCGUu--GUCGCU--UG-GGUAGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 18578 0.67 0.753356
Target:  5'- aACAGCAucguCGGUGGGCCUGguaggCCUUcCCg -3'
miRNA:   3'- -UGUCGUu---GUCGCUUGGGUa----GGAGuGG- -5'
18049 3' -53.1 NC_004680.1 + 4270 0.67 0.774042
Target:  5'- cGCgAGCA-UGGCGAgguuggGCCgGUCCUCGCa -3'
miRNA:   3'- -UG-UCGUuGUCGCU------UGGgUAGGAGUGg -5'
18049 3' -53.1 NC_004680.1 + 41574 0.67 0.774042
Target:  5'- cGCAGaauCGGUGuacuGCCCGcagcaCCUCACCa -3'
miRNA:   3'- -UGUCguuGUCGCu---UGGGUa----GGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 56802 0.67 0.784165
Target:  5'- uGCAGCAcgcccuCAGCcuGAACCCcaCCggCACCg -3'
miRNA:   3'- -UGUCGUu-----GUCG--CUUGGGuaGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 29931 0.67 0.784165
Target:  5'- uGCAGUAcgaACGGUG-ACCCGcaugCCgcgCACCa -3'
miRNA:   3'- -UGUCGU---UGUCGCuUGGGUa---GGa--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 17786 0.67 0.794125
Target:  5'- uGCGGCGcaguUGGUGAACaUCAUCCUugCGCCg -3'
miRNA:   3'- -UGUCGUu---GUCGCUUG-GGUAGGA--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 41333 0.68 0.710553
Target:  5'- cCGGCAuCAuCGGcCCCggCCUCGCCg -3'
miRNA:   3'- uGUCGUuGUcGCUuGGGuaGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 42602 0.68 0.709463
Target:  5'- uCAGCcGCGGCGAagcccacaACCCcaucccugaacauGUCCUgGCCc -3'
miRNA:   3'- uGUCGuUGUCGCU--------UGGG-------------UAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 8624 0.69 0.677576
Target:  5'- gACGGCAGCAccauGaCGAuCCCc-CCUCACCc -3'
miRNA:   3'- -UGUCGUUGU----C-GCUuGGGuaGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 41429 0.76 0.315848
Target:  5'- -gAGuCGACAGCGAACgcgacgCCAUCgUCACCg -3'
miRNA:   3'- ugUC-GUUGUCGCUUG------GGUAGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 56238 0.73 0.440401
Target:  5'- cCAGCcGCGuCGAAguuCUCAUCCUCACCg -3'
miRNA:   3'- uGUCGuUGUcGCUU---GGGUAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 34696 0.72 0.470527
Target:  5'- gACGGCGagcACAGCGAGCgCGgugaCCaUCACCu -3'
miRNA:   3'- -UGUCGU---UGUCGCUUGgGUa---GG-AGUGG- -5'
18049 3' -53.1 NC_004680.1 + 46938 0.72 0.500614
Target:  5'- aACAGCAuCAGCGGgugaaucACCCcaGUCUUgGCCa -3'
miRNA:   3'- -UGUCGUuGUCGCU-------UGGG--UAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 27219 0.71 0.52292
Target:  5'- aACAGCGcccGCAGCGGcaaGCCCAccauguuccugaUCCaCACCc -3'
miRNA:   3'- -UGUCGU---UGUCGCU---UGGGU------------AGGaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 27429 0.71 0.555416
Target:  5'- aACAGCAuCAGCaucAACCUGUgCUUCGCCg -3'
miRNA:   3'- -UGUCGUuGUCGc--UUGGGUA-GGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 8774 0.7 0.574095
Target:  5'- gACGGCAACgagaugguccugccGGCGGagACCCGUCCcggCGCg -3'
miRNA:   3'- -UGUCGUUG--------------UCGCU--UGGGUAGGa--GUGg -5'
18049 3' -53.1 NC_004680.1 + 55435 0.7 0.577407
Target:  5'- -aAGCAcucgccGCGGCGAucACCCAaaacuaugugaUCCUCACa -3'
miRNA:   3'- ugUCGU------UGUCGCU--UGGGU-----------AGGAGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.