Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18049 | 3' | -53.1 | NC_004680.1 | + | 27219 | 0.71 | 0.52292 |
Target: 5'- aACAGCGcccGCAGCGGcaaGCCCAccauguuccugaUCCaCACCc -3' miRNA: 3'- -UGUCGU---UGUCGCU---UGGGU------------AGGaGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 27429 | 0.71 | 0.555416 |
Target: 5'- aACAGCAuCAGCaucAACCUGUgCUUCGCCg -3' miRNA: 3'- -UGUCGUuGUCGc--UUGGGUA-GGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 8774 | 0.7 | 0.574095 |
Target: 5'- gACGGCAACgagaugguccugccGGCGGagACCCGUCCcggCGCg -3' miRNA: 3'- -UGUCGUUG--------------UCGCU--UGGGUAGGa--GUGg -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 55435 | 0.7 | 0.577407 |
Target: 5'- -aAGCAcucgccGCGGCGAucACCCAaaacuaugugaUCCUCACa -3' miRNA: 3'- ugUCGU------UGUCGCU--UGGGU-----------AGGAGUGg -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 8624 | 0.69 | 0.677576 |
Target: 5'- gACGGCAGCAccauGaCGAuCCCc-CCUCACCc -3' miRNA: 3'- -UGUCGUUGU----C-GCUuGGGuaGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 42602 | 0.68 | 0.709463 |
Target: 5'- uCAGCcGCGGCGAagcccacaACCCcaucccugaacauGUCCUgGCCc -3' miRNA: 3'- uGUCGuUGUCGCU--------UGGG-------------UAGGAgUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 41333 | 0.68 | 0.710553 |
Target: 5'- cCGGCAuCAuCGGcCCCggCCUCGCCg -3' miRNA: 3'- uGUCGUuGUcGCUuGGGuaGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 46953 | 0.66 | 0.813513 |
Target: 5'- gACGGCuuuAUAGCGGgucACCUGUCCacCGCUg -3' miRNA: 3'- -UGUCGu--UGUCGCU---UGGGUAGGa-GUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 1682 | 0.66 | 0.813513 |
Target: 5'- ---cCAGCAGUGAcgaacGCuCCAUCCggCACCg -3' miRNA: 3'- ugucGUUGUCGCU-----UG-GGUAGGa-GUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 14684 | 0.67 | 0.803912 |
Target: 5'- -aGGCGACuucGCGGggaucGCCgCGUUCUCACUg -3' miRNA: 3'- ugUCGUUGu--CGCU-----UGG-GUAGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 15268 | 0.67 | 0.803912 |
Target: 5'- cGCAGUu-CAGCGGugCCGgUCCaugCGCUg -3' miRNA: 3'- -UGUCGuuGUCGCUugGGU-AGGa--GUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 38640 | 0.67 | 0.794125 |
Target: 5'- cACAGCAccaACcaaGGCGAuCCCGUCaugaaUCACg -3' miRNA: 3'- -UGUCGU---UG---UCGCUuGGGUAGg----AGUGg -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 36668 | 0.66 | 0.822918 |
Target: 5'- --cGCAAcCAGCGGGgcguCCCGUUCgaUCGCCg -3' miRNA: 3'- uguCGUU-GUCGCUU----GGGUAGG--AGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 12349 | 0.66 | 0.822918 |
Target: 5'- cCAGCGcCuugGGCGGGCCaguUCgUCACCg -3' miRNA: 3'- uGUCGUuG---UCGCUUGGgu-AGgAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 47795 | 0.66 | 0.822918 |
Target: 5'- uCGGCAACGGaCGAAaCCCGcUCC-CAUg -3' miRNA: 3'- uGUCGUUGUC-GCUU-GGGU-AGGaGUGg -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 954 | 0.66 | 0.822918 |
Target: 5'- cCGGCAGCGuCaAACCCGUCa-CACCg -3' miRNA: 3'- uGUCGUUGUcGcUUGGGUAGgaGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 16122 | 0.66 | 0.8411 |
Target: 5'- gACGGUAugcCAGUGAACCCGaCaacaaUCAUCa -3' miRNA: 3'- -UGUCGUu--GUCGCUUGGGUaGg----AGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 29781 | 0.66 | 0.8411 |
Target: 5'- --cGCAACacaucGGUGAACCUAaCgUCGCCg -3' miRNA: 3'- uguCGUUG-----UCGCUUGGGUaGgAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 12952 | 0.66 | 0.8411 |
Target: 5'- gGCGGCGGCuuGCGggUCgauGUCCUUGCg -3' miRNA: 3'- -UGUCGUUGu-CGCuuGGg--UAGGAGUGg -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 1153 | 1.13 | 0.00096 |
Target: 5'- cACAGCAACAGCGAACCCAUCCUCACCa -3' miRNA: 3'- -UGUCGUUGUCGCUUGGGUAGGAGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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