Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18049 | 3' | -53.1 | NC_004680.1 | + | 27429 | 0.71 | 0.555416 |
Target: 5'- aACAGCAuCAGCaucAACCUGUgCUUCGCCg -3' miRNA: 3'- -UGUCGUuGUCGc--UUGGGUA-GGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 8774 | 0.7 | 0.574095 |
Target: 5'- gACGGCAACgagaugguccugccGGCGGagACCCGUCCcggCGCg -3' miRNA: 3'- -UGUCGUUG--------------UCGCU--UGGGUAGGa--GUGg -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 55435 | 0.7 | 0.577407 |
Target: 5'- -aAGCAcucgccGCGGCGAucACCCAaaacuaugugaUCCUCACa -3' miRNA: 3'- ugUCGU------UGUCGCU--UGGGU-----------AGGAGUGg -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 8624 | 0.69 | 0.677576 |
Target: 5'- gACGGCAGCAccauGaCGAuCCCc-CCUCACCc -3' miRNA: 3'- -UGUCGUUGU----C-GCUuGGGuaGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 42602 | 0.68 | 0.709463 |
Target: 5'- uCAGCcGCGGCGAagcccacaACCCcaucccugaacauGUCCUgGCCc -3' miRNA: 3'- uGUCGuUGUCGCU--------UGGG-------------UAGGAgUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 41333 | 0.68 | 0.710553 |
Target: 5'- cCGGCAuCAuCGGcCCCggCCUCGCCg -3' miRNA: 3'- uGUCGUuGUcGCUuGGGuaGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 26915 | 0.68 | 0.721402 |
Target: 5'- aGCAGCAacccggacccaACGGCGAACCCuggggggCa-CACCc -3' miRNA: 3'- -UGUCGU-----------UGUCGCUUGGGua-----GgaGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 748 | 0.68 | 0.709463 |
Target: 5'- uGCGGCcugccccGACAGUGAGCCagggCCgaaCACCa -3' miRNA: 3'- -UGUCG-------UUGUCGCUUGGgua-GGa--GUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 17645 | 0.69 | 0.688628 |
Target: 5'- cCAGCAACAGCacGCaCCAcCCaCGCCa -3' miRNA: 3'- uGUCGUUGUCGcuUG-GGUaGGaGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 12456 | 0.69 | 0.66648 |
Target: 5'- cCGGaccCGGCAGUGGACCCGcgCCagCACCa -3' miRNA: 3'- uGUC---GUUGUCGCUUGGGUa-GGa-GUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 37146 | 0.69 | 0.66648 |
Target: 5'- gGCGGCugcCAGCcgggaguggGGACCCAguagucagcuUCCUCAUCg -3' miRNA: 3'- -UGUCGuu-GUCG---------CUUGGGU----------AGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 36264 | 0.69 | 0.65535 |
Target: 5'- -gAGC--CAGCGAGCagaCCAgcggUCCUCGCCg -3' miRNA: 3'- ugUCGuuGUCGCUUG---GGU----AGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 55112 | 0.69 | 0.653122 |
Target: 5'- cACAGagaucaGGCGGCGAGCCaugcgccgcaugAUCCUgGCCg -3' miRNA: 3'- -UGUCg-----UUGUCGCUUGGg-----------UAGGAgUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 36593 | 0.7 | 0.621872 |
Target: 5'- aGCGGUGuCGGCGAACaucuCCGUCaUCGCCa -3' miRNA: 3'- -UGUCGUuGUCGCUUG----GGUAGgAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 13715 | 0.7 | 0.599582 |
Target: 5'- cCGGCAccuucguaguACAGCG-GCCaAUCUUCACCg -3' miRNA: 3'- uGUCGU----------UGUCGCuUGGgUAGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 34531 | 0.7 | 0.59847 |
Target: 5'- cGCGGCGGCGaacacuccGCGAaggugaaGCaCCAUCCggCACCg -3' miRNA: 3'- -UGUCGUUGU--------CGCU-------UG-GGUAGGa-GUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 49865 | 0.71 | 0.533677 |
Target: 5'- cCAGC-GCAGCGAGgaUGUCUUCGCCa -3' miRNA: 3'- uGUCGuUGUCGCUUggGUAGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 22761 | 0.72 | 0.512248 |
Target: 5'- gGCGGCGACGGCccccACCCAcCCgaaGCCg -3' miRNA: 3'- -UGUCGUUGUCGcu--UGGGUaGGag-UGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 43637 | 0.72 | 0.491182 |
Target: 5'- aGCAGCGGCAGCGuuCCCggCC--GCCc -3' miRNA: 3'- -UGUCGUUGUCGCuuGGGuaGGagUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 14510 | 0.72 | 0.480801 |
Target: 5'- uGCGGCGACGGCGGcACagacgucaaAUCCUgCACCa -3' miRNA: 3'- -UGUCGUUGUCGCU-UGgg-------UAGGA-GUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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