miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18049 3' -53.1 NC_004680.1 + 43637 0.72 0.491182
Target:  5'- aGCAGCGGCAGCGuuCCCggCC--GCCc -3'
miRNA:   3'- -UGUCGUUGUCGCuuGGGuaGGagUGG- -5'
18049 3' -53.1 NC_004680.1 + 14510 0.72 0.480801
Target:  5'- uGCGGCGACGGCGGcACagacgucaaAUCCUgCACCa -3'
miRNA:   3'- -UGUCGUUGUCGCU-UGgg-------UAGGA-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 8226 0.73 0.465432
Target:  5'- uACAGCAGCAGCaacugguacuccgccGAAUCCGcguccagcagcggacCCUCACCa -3'
miRNA:   3'- -UGUCGUUGUCG---------------CUUGGGUa--------------GGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 12407 0.67 0.753356
Target:  5'- cGCGGCAcccgaaGCGGCGGucgcCCCcgCCcCACUg -3'
miRNA:   3'- -UGUCGU------UGUCGCUu---GGGuaGGaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 2304 0.67 0.753356
Target:  5'- aGCAGuCAACAGCuGACCCccUCUCugUc -3'
miRNA:   3'- -UGUC-GUUGUCGcUUGGGuaGGAGugG- -5'
18049 3' -53.1 NC_004680.1 + 12952 0.66 0.8411
Target:  5'- gGCGGCGGCuuGCGggUCgauGUCCUUGCg -3'
miRNA:   3'- -UGUCGUUGu-CGCuuGGg--UAGGAGUGg -5'
18049 3' -53.1 NC_004680.1 + 29781 0.66 0.8411
Target:  5'- --cGCAACacaucGGUGAACCUAaCgUCGCCg -3'
miRNA:   3'- uguCGUUG-----UCGCUUGGGUaGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 16122 0.66 0.8411
Target:  5'- gACGGUAugcCAGUGAACCCGaCaacaaUCAUCa -3'
miRNA:   3'- -UGUCGUu--GUCGCUUGGGUaGg----AGUGG- -5'
18049 3' -53.1 NC_004680.1 + 954 0.66 0.822918
Target:  5'- cCGGCAGCGuCaAACCCGUCa-CACCg -3'
miRNA:   3'- uGUCGUUGUcGcUUGGGUAGgaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 47795 0.66 0.822918
Target:  5'- uCGGCAACGGaCGAAaCCCGcUCC-CAUg -3'
miRNA:   3'- uGUCGUUGUC-GCUU-GGGU-AGGaGUGg -5'
18049 3' -53.1 NC_004680.1 + 12349 0.66 0.822918
Target:  5'- cCAGCGcCuugGGCGGGCCaguUCgUCACCg -3'
miRNA:   3'- uGUCGUuG---UCGCUUGGgu-AGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 36668 0.66 0.822918
Target:  5'- --cGCAAcCAGCGGGgcguCCCGUUCgaUCGCCg -3'
miRNA:   3'- uguCGUU-GUCGCUU----GGGUAGG--AGUGG- -5'
18049 3' -53.1 NC_004680.1 + 46953 0.66 0.813513
Target:  5'- gACGGCuuuAUAGCGGgucACCUGUCCacCGCUg -3'
miRNA:   3'- -UGUCGu--UGUCGCU---UGGGUAGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 1682 0.66 0.813513
Target:  5'- ---cCAGCAGUGAcgaacGCuCCAUCCggCACCg -3'
miRNA:   3'- ugucGUUGUCGCU-----UG-GGUAGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 14684 0.67 0.803912
Target:  5'- -aGGCGACuucGCGGggaucGCCgCGUUCUCACUg -3'
miRNA:   3'- ugUCGUUGu--CGCU-----UGG-GUAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 15268 0.67 0.803912
Target:  5'- cGCAGUu-CAGCGGugCCGgUCCaugCGCUg -3'
miRNA:   3'- -UGUCGuuGUCGCUugGGU-AGGa--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 38640 0.67 0.794125
Target:  5'- cACAGCAccaACcaaGGCGAuCCCGUCaugaaUCACg -3'
miRNA:   3'- -UGUCGU---UG---UCGCUuGGGUAGg----AGUGg -5'
18049 3' -53.1 NC_004680.1 + 37003 0.67 0.794125
Target:  5'- cGCGGCAacuGCAGgGAGCCauuggCCUCGa- -3'
miRNA:   3'- -UGUCGU---UGUCgCUUGGgua--GGAGUgg -5'
18049 3' -53.1 NC_004680.1 + 11143 0.67 0.774042
Target:  5'- cCGGCAGCAG-GAugCCAUCgaCGgCg -3'
miRNA:   3'- uGUCGUUGUCgCUugGGUAGgaGUgG- -5'
18049 3' -53.1 NC_004680.1 + 10096 0.67 0.763768
Target:  5'- gGCAGCGACGuCGAugCCggCCcgACCg -3'
miRNA:   3'- -UGUCGUUGUcGCUugGGuaGGagUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.