miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18049 3' -53.1 NC_004680.1 + 55112 0.69 0.653122
Target:  5'- cACAGagaucaGGCGGCGAGCCaugcgccgcaugAUCCUgGCCg -3'
miRNA:   3'- -UGUCg-----UUGUCGCUUGGg-----------UAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 8624 0.69 0.677576
Target:  5'- gACGGCAGCAccauGaCGAuCCCc-CCUCACCc -3'
miRNA:   3'- -UGUCGUUGU----C-GCUuGGGuaGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 36264 0.69 0.65535
Target:  5'- -gAGC--CAGCGAGCagaCCAgcggUCCUCGCCg -3'
miRNA:   3'- ugUCGuuGUCGCUUG---GGU----AGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 17645 0.69 0.688628
Target:  5'- cCAGCAACAGCacGCaCCAcCCaCGCCa -3'
miRNA:   3'- uGUCGUUGUCGcuUG-GGUaGGaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 36593 0.7 0.621872
Target:  5'- aGCGGUGuCGGCGAACaucuCCGUCaUCGCCa -3'
miRNA:   3'- -UGUCGUuGUCGCUUG----GGUAGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 13715 0.7 0.599582
Target:  5'- cCGGCAccuucguaguACAGCG-GCCaAUCUUCACCg -3'
miRNA:   3'- uGUCGU----------UGUCGCuUGGgUAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 34531 0.7 0.59847
Target:  5'- cGCGGCGGCGaacacuccGCGAaggugaaGCaCCAUCCggCACCg -3'
miRNA:   3'- -UGUCGUUGU--------CGCU-------UG-GGUAGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 8774 0.7 0.574095
Target:  5'- gACGGCAACgagaugguccugccGGCGGagACCCGUCCcggCGCg -3'
miRNA:   3'- -UGUCGUUG--------------UCGCU--UGGGUAGGa--GUGg -5'
18049 3' -53.1 NC_004680.1 + 55435 0.7 0.577407
Target:  5'- -aAGCAcucgccGCGGCGAucACCCAaaacuaugugaUCCUCACa -3'
miRNA:   3'- ugUCGU------UGUCGCU--UGGGU-----------AGGAGUGg -5'
18049 3' -53.1 NC_004680.1 + 49865 0.71 0.533677
Target:  5'- cCAGC-GCAGCGAGgaUGUCUUCGCCa -3'
miRNA:   3'- uGUCGuUGUCGCUUggGUAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 27219 0.71 0.52292
Target:  5'- aACAGCGcccGCAGCGGcaaGCCCAccauguuccugaUCCaCACCc -3'
miRNA:   3'- -UGUCGU---UGUCGCU---UGGGU------------AGGaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 27429 0.71 0.555416
Target:  5'- aACAGCAuCAGCaucAACCUGUgCUUCGCCg -3'
miRNA:   3'- -UGUCGUuGUCGc--UUGGGUA-GGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 14510 0.72 0.480801
Target:  5'- uGCGGCGACGGCGGcACagacgucaaAUCCUgCACCa -3'
miRNA:   3'- -UGUCGUUGUCGCU-UGgg-------UAGGA-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 34696 0.72 0.470527
Target:  5'- gACGGCGagcACAGCGAGCgCGgugaCCaUCACCu -3'
miRNA:   3'- -UGUCGU---UGUCGCUUGgGUa---GG-AGUGG- -5'
18049 3' -53.1 NC_004680.1 + 43637 0.72 0.491182
Target:  5'- aGCAGCGGCAGCGuuCCCggCC--GCCc -3'
miRNA:   3'- -UGUCGUUGUCGCuuGGGuaGGagUGG- -5'
18049 3' -53.1 NC_004680.1 + 22761 0.72 0.512248
Target:  5'- gGCGGCGACGGCccccACCCAcCCgaaGCCg -3'
miRNA:   3'- -UGUCGUUGUCGcu--UGGGUaGGag-UGG- -5'
18049 3' -53.1 NC_004680.1 + 46938 0.72 0.500614
Target:  5'- aACAGCAuCAGCGGgugaaucACCCcaGUCUUgGCCa -3'
miRNA:   3'- -UGUCGUuGUCGCU-------UGGG--UAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 56238 0.73 0.440401
Target:  5'- cCAGCcGCGuCGAAguuCUCAUCCUCACCg -3'
miRNA:   3'- uGUCGuUGUcGCUU---GGGUAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 8226 0.73 0.465432
Target:  5'- uACAGCAGCAGCaacugguacuccgccGAAUCCGcguccagcagcggacCCUCACCa -3'
miRNA:   3'- -UGUCGUUGUCG---------------CUUGGGUa--------------GGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 9697 0.75 0.331091
Target:  5'- cGCAGCAGCAGCuu-CCUuggugacGUUCUCGCCg -3'
miRNA:   3'- -UGUCGUUGUCGcuuGGG-------UAGGAGUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.