miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18049 3' -53.1 NC_004680.1 + 29931 0.67 0.784165
Target:  5'- uGCAGUAcgaACGGUG-ACCCGcaugCCgcgCACCa -3'
miRNA:   3'- -UGUCGU---UGUCGCuUGGGUa---GGa--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 56802 0.67 0.784165
Target:  5'- uGCAGCAcgcccuCAGCcuGAACCCcaCCggCACCg -3'
miRNA:   3'- -UGUCGUu-----GUCG--CUUGGGuaGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 41574 0.67 0.774042
Target:  5'- cGCAGaauCGGUGuacuGCCCGcagcaCCUCACCa -3'
miRNA:   3'- -UGUCguuGUCGCu---UGGGUa----GGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 4270 0.67 0.774042
Target:  5'- cGCgAGCA-UGGCGAgguuggGCCgGUCCUCGCa -3'
miRNA:   3'- -UG-UCGUuGUCGCU------UGGgUAGGAGUGg -5'
18049 3' -53.1 NC_004680.1 + 18578 0.67 0.753356
Target:  5'- aACAGCAucguCGGUGGGCCUGguaggCCUUcCCg -3'
miRNA:   3'- -UGUCGUu---GUCGCUUGGGUa----GGAGuGG- -5'
18049 3' -53.1 NC_004680.1 + 2304 0.67 0.753356
Target:  5'- aGCAGuCAACAGCuGACCCccUCUCugUc -3'
miRNA:   3'- -UGUC-GUUGUCGcUUGGGuaGGAGugG- -5'
18049 3' -53.1 NC_004680.1 + 10096 0.67 0.763768
Target:  5'- gGCAGCGACGuCGAugCCggCCcgACCg -3'
miRNA:   3'- -UGUCGUUGUcGCUugGGuaGGagUGG- -5'
18049 3' -53.1 NC_004680.1 + 11143 0.67 0.774042
Target:  5'- cCGGCAGCAG-GAugCCAUCgaCGgCg -3'
miRNA:   3'- uGUCGUUGUCgCUugGGUAGgaGUgG- -5'
18049 3' -53.1 NC_004680.1 + 37003 0.67 0.794125
Target:  5'- cGCGGCAacuGCAGgGAGCCauuggCCUCGa- -3'
miRNA:   3'- -UGUCGU---UGUCgCUUGGgua--GGAGUgg -5'
18049 3' -53.1 NC_004680.1 + 38640 0.67 0.794125
Target:  5'- cACAGCAccaACcaaGGCGAuCCCGUCaugaaUCACg -3'
miRNA:   3'- -UGUCGU---UG---UCGCUuGGGUAGg----AGUGg -5'
18049 3' -53.1 NC_004680.1 + 15268 0.67 0.803912
Target:  5'- cGCAGUu-CAGCGGugCCGgUCCaugCGCUg -3'
miRNA:   3'- -UGUCGuuGUCGCUugGGU-AGGa--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 14684 0.67 0.803912
Target:  5'- -aGGCGACuucGCGGggaucGCCgCGUUCUCACUg -3'
miRNA:   3'- ugUCGUUGu--CGCU-----UGG-GUAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 12144 0.67 0.803912
Target:  5'- -gGGCAACAuC-AACCCGUCCggCGCUg -3'
miRNA:   3'- ugUCGUUGUcGcUUGGGUAGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 13872 0.66 0.812562
Target:  5'- gACAGCAACGGCG-ACUgggacgguaacggCAUCCgCAUg -3'
miRNA:   3'- -UGUCGUUGUCGCuUGG-------------GUAGGaGUGg -5'
18049 3' -53.1 NC_004680.1 + 42693 0.66 0.832117
Target:  5'- cGCGGCGACGGUggggugcagucGAACCgCGUUg-CGCCg -3'
miRNA:   3'- -UGUCGUUGUCG-----------CUUGG-GUAGgaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 57321 0.66 0.838428
Target:  5'- cGCGGUAAggauccacgccggcCGGCGAACCUgaaacgCgUCACCg -3'
miRNA:   3'- -UGUCGUU--------------GUCGCUUGGGua----GgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 26251 0.66 0.849856
Target:  5'- cCGGacuccuCGGCGGugUCGcCCUCACCg -3'
miRNA:   3'- uGUCguu---GUCGCUugGGUaGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 58359 0.66 0.847254
Target:  5'- -uGGCGAUGcguuguugguauucGCGGGgCCGUUCUCGCCc -3'
miRNA:   3'- ugUCGUUGU--------------CGCUUgGGUAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 12952 0.66 0.8411
Target:  5'- gGCGGCGGCuuGCGggUCgauGUCCUUGCg -3'
miRNA:   3'- -UGUCGUUGu-CGCuuGGg--UAGGAGUGg -5'
18049 3' -53.1 NC_004680.1 + 29781 0.66 0.8411
Target:  5'- --cGCAACacaucGGUGAACCUAaCgUCGCCg -3'
miRNA:   3'- uguCGUUG-----UCGCUUGGGUaGgAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.