miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18049 3' -53.1 NC_004680.1 + 11143 0.67 0.774042
Target:  5'- cCGGCAGCAG-GAugCCAUCgaCGgCg -3'
miRNA:   3'- uGUCGUUGUCgCUugGGUAGgaGUgG- -5'
18049 3' -53.1 NC_004680.1 + 4270 0.67 0.774042
Target:  5'- cGCgAGCA-UGGCGAgguuggGCCgGUCCUCGCa -3'
miRNA:   3'- -UG-UCGUuGUCGCU------UGGgUAGGAGUGg -5'
18049 3' -53.1 NC_004680.1 + 41574 0.67 0.774042
Target:  5'- cGCAGaauCGGUGuacuGCCCGcagcaCCUCACCa -3'
miRNA:   3'- -UGUCguuGUCGCu---UGGGUa----GGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 56802 0.67 0.784165
Target:  5'- uGCAGCAcgcccuCAGCcuGAACCCcaCCggCACCg -3'
miRNA:   3'- -UGUCGUu-----GUCG--CUUGGGuaGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 29931 0.67 0.784165
Target:  5'- uGCAGUAcgaACGGUG-ACCCGcaugCCgcgCACCa -3'
miRNA:   3'- -UGUCGU---UGUCGCuUGGGUa---GGa--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 37003 0.67 0.794125
Target:  5'- cGCGGCAacuGCAGgGAGCCauuggCCUCGa- -3'
miRNA:   3'- -UGUCGU---UGUCgCUUGGgua--GGAGUgg -5'
18049 3' -53.1 NC_004680.1 + 50168 0.67 0.794125
Target:  5'- cGCGGUcGCAcCGGGCCgGUCCU-ACCg -3'
miRNA:   3'- -UGUCGuUGUcGCUUGGgUAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 38640 0.67 0.794125
Target:  5'- cACAGCAccaACcaaGGCGAuCCCGUCaugaaUCACg -3'
miRNA:   3'- -UGUCGU---UG---UCGCUuGGGUAGg----AGUGg -5'
18049 3' -53.1 NC_004680.1 + 17786 0.67 0.794125
Target:  5'- uGCGGCGcaguUGGUGAACaUCAUCCUugCGCCg -3'
miRNA:   3'- -UGUCGUu---GUCGCUUG-GGUAGGA--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 25880 0.67 0.803912
Target:  5'- aGCgAGCucccGGCAG-GAGCUUAUCCUgGCCg -3'
miRNA:   3'- -UG-UCG----UUGUCgCUUGGGUAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 12144 0.67 0.803912
Target:  5'- -gGGCAACAuC-AACCCGUCCggCGCUg -3'
miRNA:   3'- ugUCGUUGUcGcUUGGGUAGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 14684 0.67 0.803912
Target:  5'- -aGGCGACuucGCGGggaucGCCgCGUUCUCACUg -3'
miRNA:   3'- ugUCGUUGu--CGCU-----UGG-GUAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 15268 0.67 0.803912
Target:  5'- cGCAGUu-CAGCGGugCCGgUCCaugCGCUg -3'
miRNA:   3'- -UGUCGuuGUCGCUugGGU-AGGa--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 13872 0.66 0.812562
Target:  5'- gACAGCAACGGCG-ACUgggacgguaacggCAUCCgCAUg -3'
miRNA:   3'- -UGUCGUUGUCGCuUGG-------------GUAGGaGUGg -5'
18049 3' -53.1 NC_004680.1 + 46953 0.66 0.813513
Target:  5'- gACGGCuuuAUAGCGGgucACCUGUCCacCGCUg -3'
miRNA:   3'- -UGUCGu--UGUCGCU---UGGGUAGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 1682 0.66 0.813513
Target:  5'- ---cCAGCAGUGAcgaacGCuCCAUCCggCACCg -3'
miRNA:   3'- ugucGUUGUCGCU-----UG-GGUAGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 954 0.66 0.822918
Target:  5'- cCGGCAGCGuCaAACCCGUCa-CACCg -3'
miRNA:   3'- uGUCGUUGUcGcUUGGGUAGgaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 47795 0.66 0.822918
Target:  5'- uCGGCAACGGaCGAAaCCCGcUCC-CAUg -3'
miRNA:   3'- uGUCGUUGUC-GCUU-GGGU-AGGaGUGg -5'
18049 3' -53.1 NC_004680.1 + 12349 0.66 0.822918
Target:  5'- cCAGCGcCuugGGCGGGCCaguUCgUCACCg -3'
miRNA:   3'- uGUCGUuG---UCGCUUGGgu-AGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 36668 0.66 0.822918
Target:  5'- --cGCAAcCAGCGGGgcguCCCGUUCgaUCGCCg -3'
miRNA:   3'- uguCGUU-GUCGCUU----GGGUAGG--AGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.