miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18049 3' -53.1 NC_004680.1 + 34531 0.7 0.59847
Target:  5'- cGCGGCGGCGaacacuccGCGAaggugaaGCaCCAUCCggCACCg -3'
miRNA:   3'- -UGUCGUUGU--------CGCU-------UG-GGUAGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 13715 0.7 0.599582
Target:  5'- cCGGCAccuucguaguACAGCG-GCCaAUCUUCACCg -3'
miRNA:   3'- uGUCGU----------UGUCGCuUGGgUAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 36593 0.7 0.621872
Target:  5'- aGCGGUGuCGGCGAACaucuCCGUCaUCGCCa -3'
miRNA:   3'- -UGUCGUuGUCGCUUG----GGUAGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 55112 0.69 0.653122
Target:  5'- cACAGagaucaGGCGGCGAGCCaugcgccgcaugAUCCUgGCCg -3'
miRNA:   3'- -UGUCg-----UUGUCGCUUGGg-----------UAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 36264 0.69 0.65535
Target:  5'- -gAGC--CAGCGAGCagaCCAgcggUCCUCGCCg -3'
miRNA:   3'- ugUCGuuGUCGCUUG---GGU----AGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 37146 0.69 0.66648
Target:  5'- gGCGGCugcCAGCcgggaguggGGACCCAguagucagcuUCCUCAUCg -3'
miRNA:   3'- -UGUCGuu-GUCG---------CUUGGGU----------AGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 12456 0.69 0.66648
Target:  5'- cCGGaccCGGCAGUGGACCCGcgCCagCACCa -3'
miRNA:   3'- uGUC---GUUGUCGCUUGGGUa-GGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 8624 0.69 0.677576
Target:  5'- gACGGCAGCAccauGaCGAuCCCc-CCUCACCc -3'
miRNA:   3'- -UGUCGUUGU----C-GCUuGGGuaGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 17645 0.69 0.688628
Target:  5'- cCAGCAACAGCacGCaCCAcCCaCGCCa -3'
miRNA:   3'- uGUCGUUGUCGcuUG-GGUaGGaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 748 0.68 0.709463
Target:  5'- uGCGGCcugccccGACAGUGAGCCagggCCgaaCACCa -3'
miRNA:   3'- -UGUCG-------UUGUCGCUUGGgua-GGa--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 42602 0.68 0.709463
Target:  5'- uCAGCcGCGGCGAagcccacaACCCcaucccugaacauGUCCUgGCCc -3'
miRNA:   3'- uGUCGuUGUCGCU--------UGGG-------------UAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 41333 0.68 0.710553
Target:  5'- cCGGCAuCAuCGGcCCCggCCUCGCCg -3'
miRNA:   3'- uGUCGUuGUcGCUuGGGuaGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 26915 0.68 0.721402
Target:  5'- aGCAGCAacccggacccaACGGCGAACCCuggggggCa-CACCc -3'
miRNA:   3'- -UGUCGU-----------UGUCGCUUGGGua-----GgaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 19457 0.68 0.732161
Target:  5'- -gAGCAuuuCGGCGAcaACgCCAUCaUCACCc -3'
miRNA:   3'- ugUCGUu--GUCGCU--UG-GGUAGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 1486 0.68 0.732161
Target:  5'- aGCAuccGCGACAGCaGcAACCCGcUUCUcCACCg -3'
miRNA:   3'- -UGU---CGUUGUCG-C-UUGGGU-AGGA-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 21901 0.67 0.750206
Target:  5'- cCAGcCAACAGCcacGCUCAUCCcccaaucugcaaguUCACCg -3'
miRNA:   3'- uGUC-GUUGUCGcu-UGGGUAGG--------------AGUGG- -5'
18049 3' -53.1 NC_004680.1 + 12407 0.67 0.753356
Target:  5'- cGCGGCAcccgaaGCGGCGGucgcCCCcgCCcCACUg -3'
miRNA:   3'- -UGUCGU------UGUCGCUu---GGGuaGGaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 2304 0.67 0.753356
Target:  5'- aGCAGuCAACAGCuGACCCccUCUCugUc -3'
miRNA:   3'- -UGUC-GUUGUCGcUUGGGuaGGAGugG- -5'
18049 3' -53.1 NC_004680.1 + 18578 0.67 0.753356
Target:  5'- aACAGCAucguCGGUGGGCCUGguaggCCUUcCCg -3'
miRNA:   3'- -UGUCGUu---GUCGCUUGGGUa----GGAGuGG- -5'
18049 3' -53.1 NC_004680.1 + 10096 0.67 0.763768
Target:  5'- gGCAGCGACGuCGAugCCggCCcgACCg -3'
miRNA:   3'- -UGUCGUUGUcGCUugGGuaGGagUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.