miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18049 3' -53.1 NC_004680.1 + 50168 0.67 0.794125
Target:  5'- cGCGGUcGCAcCGGGCCgGUCCU-ACCg -3'
miRNA:   3'- -UGUCGuUGUcGCUUGGgUAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 17786 0.67 0.794125
Target:  5'- uGCGGCGcaguUGGUGAACaUCAUCCUugCGCCg -3'
miRNA:   3'- -UGUCGUu---GUCGCUUG-GGUAGGA--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 29931 0.67 0.784165
Target:  5'- uGCAGUAcgaACGGUG-ACCCGcaugCCgcgCACCa -3'
miRNA:   3'- -UGUCGU---UGUCGCuUGGGUa---GGa--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 56802 0.67 0.784165
Target:  5'- uGCAGCAcgcccuCAGCcuGAACCCcaCCggCACCg -3'
miRNA:   3'- -UGUCGUu-----GUCG--CUUGGGuaGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 11143 0.67 0.774042
Target:  5'- cCGGCAGCAG-GAugCCAUCgaCGgCg -3'
miRNA:   3'- uGUCGUUGUCgCUugGGUAGgaGUgG- -5'
18049 3' -53.1 NC_004680.1 + 4270 0.67 0.774042
Target:  5'- cGCgAGCA-UGGCGAgguuggGCCgGUCCUCGCa -3'
miRNA:   3'- -UG-UCGUuGUCGCU------UGGgUAGGAGUGg -5'
18049 3' -53.1 NC_004680.1 + 41574 0.67 0.774042
Target:  5'- cGCAGaauCGGUGuacuGCCCGcagcaCCUCACCa -3'
miRNA:   3'- -UGUCguuGUCGCu---UGGGUa----GGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 10096 0.67 0.763768
Target:  5'- gGCAGCGACGuCGAugCCggCCcgACCg -3'
miRNA:   3'- -UGUCGUUGUcGCUugGGuaGGagUGG- -5'
18049 3' -53.1 NC_004680.1 + 2304 0.67 0.753356
Target:  5'- aGCAGuCAACAGCuGACCCccUCUCugUc -3'
miRNA:   3'- -UGUC-GUUGUCGcUUGGGuaGGAGugG- -5'
18049 3' -53.1 NC_004680.1 + 18578 0.67 0.753356
Target:  5'- aACAGCAucguCGGUGGGCCUGguaggCCUUcCCg -3'
miRNA:   3'- -UGUCGUu---GUCGCUUGGGUa----GGAGuGG- -5'
18049 3' -53.1 NC_004680.1 + 12407 0.67 0.753356
Target:  5'- cGCGGCAcccgaaGCGGCGGucgcCCCcgCCcCACUg -3'
miRNA:   3'- -UGUCGU------UGUCGCUu---GGGuaGGaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 21901 0.67 0.750206
Target:  5'- cCAGcCAACAGCcacGCUCAUCCcccaaucugcaaguUCACCg -3'
miRNA:   3'- uGUC-GUUGUCGcu-UGGGUAGG--------------AGUGG- -5'
18049 3' -53.1 NC_004680.1 + 19457 0.68 0.732161
Target:  5'- -gAGCAuuuCGGCGAcaACgCCAUCaUCACCc -3'
miRNA:   3'- ugUCGUu--GUCGCU--UG-GGUAGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 1486 0.68 0.732161
Target:  5'- aGCAuccGCGACAGCaGcAACCCGcUUCUcCACCg -3'
miRNA:   3'- -UGU---CGUUGUCG-C-UUGGGU-AGGA-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 26915 0.68 0.721402
Target:  5'- aGCAGCAacccggacccaACGGCGAACCCuggggggCa-CACCc -3'
miRNA:   3'- -UGUCGU-----------UGUCGCUUGGGua-----GgaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 41333 0.68 0.710553
Target:  5'- cCGGCAuCAuCGGcCCCggCCUCGCCg -3'
miRNA:   3'- uGUCGUuGUcGCUuGGGuaGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 42602 0.68 0.709463
Target:  5'- uCAGCcGCGGCGAagcccacaACCCcaucccugaacauGUCCUgGCCc -3'
miRNA:   3'- uGUCGuUGUCGCU--------UGGG-------------UAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 748 0.68 0.709463
Target:  5'- uGCGGCcugccccGACAGUGAGCCagggCCgaaCACCa -3'
miRNA:   3'- -UGUCG-------UUGUCGCUUGGgua-GGa--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 17645 0.69 0.688628
Target:  5'- cCAGCAACAGCacGCaCCAcCCaCGCCa -3'
miRNA:   3'- uGUCGUUGUCGcuUG-GGUaGGaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 8624 0.69 0.677576
Target:  5'- gACGGCAGCAccauGaCGAuCCCc-CCUCACCc -3'
miRNA:   3'- -UGUCGUUGU----C-GCUuGGGuaGGAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.