Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18049 | 3' | -53.1 | NC_004680.1 | + | 50168 | 0.67 | 0.794125 |
Target: 5'- cGCGGUcGCAcCGGGCCgGUCCU-ACCg -3' miRNA: 3'- -UGUCGuUGUcGCUUGGgUAGGAgUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 38640 | 0.67 | 0.794125 |
Target: 5'- cACAGCAccaACcaaGGCGAuCCCGUCaugaaUCACg -3' miRNA: 3'- -UGUCGU---UG---UCGCUuGGGUAGg----AGUGg -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 56802 | 0.67 | 0.784165 |
Target: 5'- uGCAGCAcgcccuCAGCcuGAACCCcaCCggCACCg -3' miRNA: 3'- -UGUCGUu-----GUCG--CUUGGGuaGGa-GUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 29931 | 0.67 | 0.784165 |
Target: 5'- uGCAGUAcgaACGGUG-ACCCGcaugCCgcgCACCa -3' miRNA: 3'- -UGUCGU---UGUCGCuUGGGUa---GGa--GUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 41574 | 0.67 | 0.774042 |
Target: 5'- cGCAGaauCGGUGuacuGCCCGcagcaCCUCACCa -3' miRNA: 3'- -UGUCguuGUCGCu---UGGGUa----GGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 4270 | 0.67 | 0.774042 |
Target: 5'- cGCgAGCA-UGGCGAgguuggGCCgGUCCUCGCa -3' miRNA: 3'- -UG-UCGUuGUCGCU------UGGgUAGGAGUGg -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 11143 | 0.67 | 0.774042 |
Target: 5'- cCGGCAGCAG-GAugCCAUCgaCGgCg -3' miRNA: 3'- uGUCGUUGUCgCUugGGUAGgaGUgG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 10096 | 0.67 | 0.763768 |
Target: 5'- gGCAGCGACGuCGAugCCggCCcgACCg -3' miRNA: 3'- -UGUCGUUGUcGCUugGGuaGGagUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 2304 | 0.67 | 0.753356 |
Target: 5'- aGCAGuCAACAGCuGACCCccUCUCugUc -3' miRNA: 3'- -UGUC-GUUGUCGcUUGGGuaGGAGugG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 18578 | 0.67 | 0.753356 |
Target: 5'- aACAGCAucguCGGUGGGCCUGguaggCCUUcCCg -3' miRNA: 3'- -UGUCGUu---GUCGCUUGGGUa----GGAGuGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 12407 | 0.67 | 0.753356 |
Target: 5'- cGCGGCAcccgaaGCGGCGGucgcCCCcgCCcCACUg -3' miRNA: 3'- -UGUCGU------UGUCGCUu---GGGuaGGaGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 21901 | 0.67 | 0.750206 |
Target: 5'- cCAGcCAACAGCcacGCUCAUCCcccaaucugcaaguUCACCg -3' miRNA: 3'- uGUC-GUUGUCGcu-UGGGUAGG--------------AGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 19457 | 0.68 | 0.732161 |
Target: 5'- -gAGCAuuuCGGCGAcaACgCCAUCaUCACCc -3' miRNA: 3'- ugUCGUu--GUCGCU--UG-GGUAGgAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 1486 | 0.68 | 0.732161 |
Target: 5'- aGCAuccGCGACAGCaGcAACCCGcUUCUcCACCg -3' miRNA: 3'- -UGU---CGUUGUCG-C-UUGGGU-AGGA-GUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 26915 | 0.68 | 0.721402 |
Target: 5'- aGCAGCAacccggacccaACGGCGAACCCuggggggCa-CACCc -3' miRNA: 3'- -UGUCGU-----------UGUCGCUUGGGua-----GgaGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 41333 | 0.68 | 0.710553 |
Target: 5'- cCGGCAuCAuCGGcCCCggCCUCGCCg -3' miRNA: 3'- uGUCGUuGUcGCUuGGGuaGGAGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 42602 | 0.68 | 0.709463 |
Target: 5'- uCAGCcGCGGCGAagcccacaACCCcaucccugaacauGUCCUgGCCc -3' miRNA: 3'- uGUCGuUGUCGCU--------UGGG-------------UAGGAgUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 748 | 0.68 | 0.709463 |
Target: 5'- uGCGGCcugccccGACAGUGAGCCagggCCgaaCACCa -3' miRNA: 3'- -UGUCG-------UUGUCGCUUGGgua-GGa--GUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 17645 | 0.69 | 0.688628 |
Target: 5'- cCAGCAACAGCacGCaCCAcCCaCGCCa -3' miRNA: 3'- uGUCGUUGUCGcuUG-GGUaGGaGUGG- -5' |
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18049 | 3' | -53.1 | NC_004680.1 | + | 8624 | 0.69 | 0.677576 |
Target: 5'- gACGGCAGCAccauGaCGAuCCCc-CCUCACCc -3' miRNA: 3'- -UGUCGUUGU----C-GCUuGGGuaGGAGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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