miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18049 3' -53.1 NC_004680.1 + 13872 0.66 0.812562
Target:  5'- gACAGCAACGGCG-ACUgggacgguaacggCAUCCgCAUg -3'
miRNA:   3'- -UGUCGUUGUCGCuUGG-------------GUAGGaGUGg -5'
18049 3' -53.1 NC_004680.1 + 14428 0.81 0.148537
Target:  5'- uCGGCAGCAGCGGACCaaacuccacauacuCAUCCgCGCCg -3'
miRNA:   3'- uGUCGUUGUCGCUUGG--------------GUAGGaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 14510 0.72 0.480801
Target:  5'- uGCGGCGACGGCGGcACagacgucaaAUCCUgCACCa -3'
miRNA:   3'- -UGUCGUUGUCGCU-UGgg-------UAGGA-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 14684 0.67 0.803912
Target:  5'- -aGGCGACuucGCGGggaucGCCgCGUUCUCACUg -3'
miRNA:   3'- ugUCGUUGu--CGCU-----UGG-GUAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 15268 0.67 0.803912
Target:  5'- cGCAGUu-CAGCGGugCCGgUCCaugCGCUg -3'
miRNA:   3'- -UGUCGuuGUCGCUugGGU-AGGa--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 16122 0.66 0.8411
Target:  5'- gACGGUAugcCAGUGAACCCGaCaacaaUCAUCa -3'
miRNA:   3'- -UGUCGUu--GUCGCUUGGGUaGg----AGUGG- -5'
18049 3' -53.1 NC_004680.1 + 17645 0.69 0.688628
Target:  5'- cCAGCAACAGCacGCaCCAcCCaCGCCa -3'
miRNA:   3'- uGUCGUUGUCGcuUG-GGUaGGaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 17786 0.67 0.794125
Target:  5'- uGCGGCGcaguUGGUGAACaUCAUCCUugCGCCg -3'
miRNA:   3'- -UGUCGUu---GUCGCUUG-GGUAGGA--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 18578 0.67 0.753356
Target:  5'- aACAGCAucguCGGUGGGCCUGguaggCCUUcCCg -3'
miRNA:   3'- -UGUCGUu---GUCGCUUGGGUa----GGAGuGG- -5'
18049 3' -53.1 NC_004680.1 + 19457 0.68 0.732161
Target:  5'- -gAGCAuuuCGGCGAcaACgCCAUCaUCACCc -3'
miRNA:   3'- ugUCGUu--GUCGCU--UG-GGUAGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 21901 0.67 0.750206
Target:  5'- cCAGcCAACAGCcacGCUCAUCCcccaaucugcaaguUCACCg -3'
miRNA:   3'- uGUC-GUUGUCGcu-UGGGUAGG--------------AGUGG- -5'
18049 3' -53.1 NC_004680.1 + 22761 0.72 0.512248
Target:  5'- gGCGGCGACGGCccccACCCAcCCgaaGCCg -3'
miRNA:   3'- -UGUCGUUGUCGcu--UGGGUaGGag-UGG- -5'
18049 3' -53.1 NC_004680.1 + 25880 0.67 0.803912
Target:  5'- aGCgAGCucccGGCAG-GAGCUUAUCCUgGCCg -3'
miRNA:   3'- -UG-UCG----UUGUCgCUUGGGUAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 26251 0.66 0.849856
Target:  5'- cCGGacuccuCGGCGGugUCGcCCUCACCg -3'
miRNA:   3'- uGUCguu---GUCGCUugGGUaGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 26915 0.68 0.721402
Target:  5'- aGCAGCAacccggacccaACGGCGAACCCuggggggCa-CACCc -3'
miRNA:   3'- -UGUCGU-----------UGUCGCUUGGGua-----GgaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 27219 0.71 0.52292
Target:  5'- aACAGCGcccGCAGCGGcaaGCCCAccauguuccugaUCCaCACCc -3'
miRNA:   3'- -UGUCGU---UGUCGCU---UGGGU------------AGGaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 27270 0.8 0.162387
Target:  5'- gGCGGCGGCGGCGAcgcugccGCCgAgaaCCUCGCCa -3'
miRNA:   3'- -UGUCGUUGUCGCU-------UGGgUa--GGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 27429 0.71 0.555416
Target:  5'- aACAGCAuCAGCaucAACCUGUgCUUCGCCg -3'
miRNA:   3'- -UGUCGUuGUCGc--UUGGGUA-GGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 29781 0.66 0.8411
Target:  5'- --cGCAACacaucGGUGAACCUAaCgUCGCCg -3'
miRNA:   3'- uguCGUUG-----UCGCUUGGGUaGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 29931 0.67 0.784165
Target:  5'- uGCAGUAcgaACGGUG-ACCCGcaugCCgcgCACCa -3'
miRNA:   3'- -UGUCGU---UGUCGCuUGGGUa---GGa--GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.