miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18049 3' -53.1 NC_004680.1 + 748 0.68 0.709463
Target:  5'- uGCGGCcugccccGACAGUGAGCCagggCCgaaCACCa -3'
miRNA:   3'- -UGUCG-------UUGUCGCUUGGgua-GGa--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 954 0.66 0.822918
Target:  5'- cCGGCAGCGuCaAACCCGUCa-CACCg -3'
miRNA:   3'- uGUCGUUGUcGcUUGGGUAGgaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 1153 1.13 0.00096
Target:  5'- cACAGCAACAGCGAACCCAUCCUCACCa -3'
miRNA:   3'- -UGUCGUUGUCGCUUGGGUAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 1486 0.68 0.732161
Target:  5'- aGCAuccGCGACAGCaGcAACCCGcUUCUcCACCg -3'
miRNA:   3'- -UGU---CGUUGUCG-C-UUGGGU-AGGA-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 1682 0.66 0.813513
Target:  5'- ---cCAGCAGUGAcgaacGCuCCAUCCggCACCg -3'
miRNA:   3'- ugucGUUGUCGCU-----UG-GGUAGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 2304 0.67 0.753356
Target:  5'- aGCAGuCAACAGCuGACCCccUCUCugUc -3'
miRNA:   3'- -UGUC-GUUGUCGcUUGGGuaGGAGugG- -5'
18049 3' -53.1 NC_004680.1 + 2937 0.81 0.141624
Target:  5'- cCGGCGGCGGCGAACCgGUCacuacagcaUCACCa -3'
miRNA:   3'- uGUCGUUGUCGCUUGGgUAGg--------AGUGG- -5'
18049 3' -53.1 NC_004680.1 + 4270 0.67 0.774042
Target:  5'- cGCgAGCA-UGGCGAgguuggGCCgGUCCUCGCa -3'
miRNA:   3'- -UG-UCGUuGUCGCU------UGGgUAGGAGUGg -5'
18049 3' -53.1 NC_004680.1 + 8226 0.73 0.465432
Target:  5'- uACAGCAGCAGCaacugguacuccgccGAAUCCGcguccagcagcggacCCUCACCa -3'
miRNA:   3'- -UGUCGUUGUCG---------------CUUGGGUa--------------GGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 8624 0.69 0.677576
Target:  5'- gACGGCAGCAccauGaCGAuCCCc-CCUCACCc -3'
miRNA:   3'- -UGUCGUUGU----C-GCUuGGGuaGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 8774 0.7 0.574095
Target:  5'- gACGGCAACgagaugguccugccGGCGGagACCCGUCCcggCGCg -3'
miRNA:   3'- -UGUCGUUG--------------UCGCU--UGGGUAGGa--GUGg -5'
18049 3' -53.1 NC_004680.1 + 9697 0.75 0.331091
Target:  5'- cGCAGCAGCAGCuu-CCUuggugacGUUCUCGCCg -3'
miRNA:   3'- -UGUCGUUGUCGcuuGGG-------UAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 10096 0.67 0.763768
Target:  5'- gGCAGCGACGuCGAugCCggCCcgACCg -3'
miRNA:   3'- -UGUCGUUGUcGCUugGGuaGGagUGG- -5'
18049 3' -53.1 NC_004680.1 + 11143 0.67 0.774042
Target:  5'- cCGGCAGCAG-GAugCCAUCgaCGgCg -3'
miRNA:   3'- uGUCGUUGUCgCUugGGUAGgaGUgG- -5'
18049 3' -53.1 NC_004680.1 + 12144 0.67 0.803912
Target:  5'- -gGGCAACAuC-AACCCGUCCggCGCUg -3'
miRNA:   3'- ugUCGUUGUcGcUUGGGUAGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 12349 0.66 0.822918
Target:  5'- cCAGCGcCuugGGCGGGCCaguUCgUCACCg -3'
miRNA:   3'- uGUCGUuG---UCGCUUGGgu-AGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 12407 0.67 0.753356
Target:  5'- cGCGGCAcccgaaGCGGCGGucgcCCCcgCCcCACUg -3'
miRNA:   3'- -UGUCGU------UGUCGCUu---GGGuaGGaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 12456 0.69 0.66648
Target:  5'- cCGGaccCGGCAGUGGACCCGcgCCagCACCa -3'
miRNA:   3'- uGUC---GUUGUCGCUUGGGUa-GGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 12952 0.66 0.8411
Target:  5'- gGCGGCGGCuuGCGggUCgauGUCCUUGCg -3'
miRNA:   3'- -UGUCGUUGu-CGCuuGGg--UAGGAGUGg -5'
18049 3' -53.1 NC_004680.1 + 13715 0.7 0.599582
Target:  5'- cCGGCAccuucguaguACAGCG-GCCaAUCUUCACCg -3'
miRNA:   3'- uGUCGU----------UGUCGCuUGGgUAGGAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.