miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18049 3' -53.1 NC_004680.1 + 55435 0.7 0.577407
Target:  5'- -aAGCAcucgccGCGGCGAucACCCAaaacuaugugaUCCUCACa -3'
miRNA:   3'- ugUCGU------UGUCGCU--UGGGU-----------AGGAGUGg -5'
18049 3' -53.1 NC_004680.1 + 34531 0.7 0.59847
Target:  5'- cGCGGCGGCGaacacuccGCGAaggugaaGCaCCAUCCggCACCg -3'
miRNA:   3'- -UGUCGUUGU--------CGCU-------UG-GGUAGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 8774 0.7 0.574095
Target:  5'- gACGGCAACgagaugguccugccGGCGGagACCCGUCCcggCGCg -3'
miRNA:   3'- -UGUCGUUG--------------UCGCU--UGGGUAGGa--GUGg -5'
18049 3' -53.1 NC_004680.1 + 55112 0.69 0.653122
Target:  5'- cACAGagaucaGGCGGCGAGCCaugcgccgcaugAUCCUgGCCg -3'
miRNA:   3'- -UGUCg-----UUGUCGCUUGGg-----------UAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 36264 0.69 0.65535
Target:  5'- -gAGC--CAGCGAGCagaCCAgcggUCCUCGCCg -3'
miRNA:   3'- ugUCGuuGUCGCUUG---GGU----AGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 37146 0.69 0.66648
Target:  5'- gGCGGCugcCAGCcgggaguggGGACCCAguagucagcuUCCUCAUCg -3'
miRNA:   3'- -UGUCGuu-GUCG---------CUUGGGU----------AGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 17645 0.69 0.688628
Target:  5'- cCAGCAACAGCacGCaCCAcCCaCGCCa -3'
miRNA:   3'- uGUCGUUGUCGcuUG-GGUaGGaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 8624 0.69 0.677576
Target:  5'- gACGGCAGCAccauGaCGAuCCCc-CCUCACCc -3'
miRNA:   3'- -UGUCGUUGU----C-GCUuGGGuaGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 12456 0.69 0.66648
Target:  5'- cCGGaccCGGCAGUGGACCCGcgCCagCACCa -3'
miRNA:   3'- uGUC---GUUGUCGCUUGGGUa-GGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 26915 0.68 0.721402
Target:  5'- aGCAGCAacccggacccaACGGCGAACCCuggggggCa-CACCc -3'
miRNA:   3'- -UGUCGU-----------UGUCGCUUGGGua-----GgaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 41333 0.68 0.710553
Target:  5'- cCGGCAuCAuCGGcCCCggCCUCGCCg -3'
miRNA:   3'- uGUCGUuGUcGCUuGGGuaGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 748 0.68 0.709463
Target:  5'- uGCGGCcugccccGACAGUGAGCCagggCCgaaCACCa -3'
miRNA:   3'- -UGUCG-------UUGUCGCUUGGgua-GGa--GUGG- -5'
18049 3' -53.1 NC_004680.1 + 19457 0.68 0.732161
Target:  5'- -gAGCAuuuCGGCGAcaACgCCAUCaUCACCc -3'
miRNA:   3'- ugUCGUu--GUCGCU--UG-GGUAGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 42602 0.68 0.709463
Target:  5'- uCAGCcGCGGCGAagcccacaACCCcaucccugaacauGUCCUgGCCc -3'
miRNA:   3'- uGUCGuUGUCGCU--------UGGG-------------UAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 1486 0.68 0.732161
Target:  5'- aGCAuccGCGACAGCaGcAACCCGcUUCUcCACCg -3'
miRNA:   3'- -UGU---CGUUGUCG-C-UUGGGU-AGGA-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 38640 0.67 0.794125
Target:  5'- cACAGCAccaACcaaGGCGAuCCCGUCaugaaUCACg -3'
miRNA:   3'- -UGUCGU---UG---UCGCUuGGGUAGg----AGUGg -5'
18049 3' -53.1 NC_004680.1 + 50168 0.67 0.794125
Target:  5'- cGCGGUcGCAcCGGGCCgGUCCU-ACCg -3'
miRNA:   3'- -UGUCGuUGUcGCUUGGgUAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 18578 0.67 0.753356
Target:  5'- aACAGCAucguCGGUGGGCCUGguaggCCUUcCCg -3'
miRNA:   3'- -UGUCGUu---GUCGCUUGGGUa----GGAGuGG- -5'
18049 3' -53.1 NC_004680.1 + 25880 0.67 0.803912
Target:  5'- aGCgAGCucccGGCAG-GAGCUUAUCCUgGCCg -3'
miRNA:   3'- -UG-UCG----UUGUCgCUUGGGUAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 12144 0.67 0.803912
Target:  5'- -gGGCAACAuC-AACCCGUCCggCGCUg -3'
miRNA:   3'- ugUCGUUGUcGcUUGGGUAGGa-GUGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.