miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18049 3' -53.1 NC_004680.1 + 14428 0.81 0.148537
Target:  5'- uCGGCAGCAGCGGACCaaacuccacauacuCAUCCgCGCCg -3'
miRNA:   3'- uGUCGUUGUCGCUUGG--------------GUAGGaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 51603 0.8 0.167411
Target:  5'- gGCGGCGugcGCcuuGGCGAuccGCUCAUCCUCGCCg -3'
miRNA:   3'- -UGUCGU---UG---UCGCU---UGGGUAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 44219 0.76 0.298868
Target:  5'- cGCAGCAGCAGCGAgaagagcggcaGCCaguucgcgggCCUCAUCg -3'
miRNA:   3'- -UGUCGUUGUCGCU-----------UGGgua-------GGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 9697 0.75 0.331091
Target:  5'- cGCAGCAGCAGCuu-CCUuggugacGUUCUCGCCg -3'
miRNA:   3'- -UGUCGUUGUCGcuuGGG-------UAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 8226 0.73 0.465432
Target:  5'- uACAGCAGCAGCaacugguacuccgccGAAUCCGcguccagcagcggacCCUCACCa -3'
miRNA:   3'- -UGUCGUUGUCG---------------CUUGGGUa--------------GGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 14510 0.72 0.480801
Target:  5'- uGCGGCGACGGCGGcACagacgucaaAUCCUgCACCa -3'
miRNA:   3'- -UGUCGUUGUCGCU-UGgg-------UAGGA-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 12349 0.66 0.822918
Target:  5'- cCAGCGcCuugGGCGGGCCaguUCgUCACCg -3'
miRNA:   3'- uGUCGUuG---UCGCUUGGgu-AGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 22761 0.72 0.512248
Target:  5'- gGCGGCGACGGCccccACCCAcCCgaaGCCg -3'
miRNA:   3'- -UGUCGUUGUCGcu--UGGGUaGGag-UGG- -5'
18049 3' -53.1 NC_004680.1 + 49865 0.71 0.533677
Target:  5'- cCAGC-GCAGCGAGgaUGUCUUCGCCa -3'
miRNA:   3'- uGUCGuUGUCGCUUggGUAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 34531 0.7 0.59847
Target:  5'- cGCGGCGGCGaacacuccGCGAaggugaaGCaCCAUCCggCACCg -3'
miRNA:   3'- -UGUCGUUGU--------CGCU-------UG-GGUAGGa-GUGG- -5'
18049 3' -53.1 NC_004680.1 + 13715 0.7 0.599582
Target:  5'- cCGGCAccuucguaguACAGCG-GCCaAUCUUCACCg -3'
miRNA:   3'- uGUCGU----------UGUCGCuUGGgUAGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 36593 0.7 0.621872
Target:  5'- aGCGGUGuCGGCGAACaucuCCGUCaUCGCCa -3'
miRNA:   3'- -UGUCGUuGUCGCUUG----GGUAGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 55112 0.69 0.653122
Target:  5'- cACAGagaucaGGCGGCGAGCCaugcgccgcaugAUCCUgGCCg -3'
miRNA:   3'- -UGUCg-----UUGUCGCUUGGg-----------UAGGAgUGG- -5'
18049 3' -53.1 NC_004680.1 + 36264 0.69 0.65535
Target:  5'- -gAGC--CAGCGAGCagaCCAgcggUCCUCGCCg -3'
miRNA:   3'- ugUCGuuGUCGCUUG---GGU----AGGAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 47795 0.66 0.822918
Target:  5'- uCGGCAACGGaCGAAaCCCGcUCC-CAUg -3'
miRNA:   3'- uGUCGUUGUC-GCUU-GGGU-AGGaGUGg -5'
18049 3' -53.1 NC_004680.1 + 954 0.66 0.822918
Target:  5'- cCGGCAGCGuCaAACCCGUCa-CACCg -3'
miRNA:   3'- uGUCGUUGUcGcUUGGGUAGgaGUGG- -5'
18049 3' -53.1 NC_004680.1 + 16122 0.66 0.8411
Target:  5'- gACGGUAugcCAGUGAACCCGaCaacaaUCAUCa -3'
miRNA:   3'- -UGUCGUu--GUCGCUUGGGUaGg----AGUGG- -5'
18049 3' -53.1 NC_004680.1 + 29781 0.66 0.8411
Target:  5'- --cGCAACacaucGGUGAACCUAaCgUCGCCg -3'
miRNA:   3'- uguCGUUG-----UCGCUUGGGUaGgAGUGG- -5'
18049 3' -53.1 NC_004680.1 + 12952 0.66 0.8411
Target:  5'- gGCGGCGGCuuGCGggUCgauGUCCUUGCg -3'
miRNA:   3'- -UGUCGUUGu-CGCuuGGg--UAGGAGUGg -5'
18049 3' -53.1 NC_004680.1 + 58359 0.66 0.847254
Target:  5'- -uGGCGAUGcguuguugguauucGCGGGgCCGUUCUCGCCc -3'
miRNA:   3'- ugUCGUUGU--------------CGCUUgGGUAGGAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.