miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18050 5' -50.9 NC_004680.1 + 58867 0.66 0.92972
Target:  5'- uUGCGCCACUGAc-CAuAUGGA-ACGCa -3'
miRNA:   3'- -AUGCGGUGGCUaaGUcUAUCUgUGCG- -5'
18050 5' -50.9 NC_004680.1 + 9101 0.66 0.926221
Target:  5'- aGCGUCGCCGAUuggcaUCAGGgcagguuguccaguuUAGAguUGCu -3'
miRNA:   3'- aUGCGGUGGCUA-----AGUCU---------------AUCUguGCG- -5'
18050 5' -50.9 NC_004680.1 + 28968 0.66 0.923831
Target:  5'- gACGCCGCCGAacgcgCGGccc-GCACGUu -3'
miRNA:   3'- aUGCGGUGGCUaa---GUCuaucUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 56749 0.66 0.923831
Target:  5'- cGgGCCACUGAUguggCGG--GGACGuCGCa -3'
miRNA:   3'- aUgCGGUGGCUAa---GUCuaUCUGU-GCG- -5'
18050 5' -50.9 NC_004680.1 + 7197 0.66 0.917649
Target:  5'- cACGCCACCaacaCAcGAUGGAUacucgGCGCu -3'
miRNA:   3'- aUGCGGUGGcuaaGU-CUAUCUG-----UGCG- -5'
18050 5' -50.9 NC_004680.1 + 13245 0.66 0.917649
Target:  5'- gGCGCCACCGAagaCGGcaucaccaacAUuGAUGCGCu -3'
miRNA:   3'- aUGCGGUGGCUaa-GUC----------UAuCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 8858 0.66 0.9138
Target:  5'- -uCGCCGCCGcgugaggugcggaucGUUCAGGUcguguuGGGCAUGg -3'
miRNA:   3'- auGCGGUGGC---------------UAAGUCUA------UCUGUGCg -5'
18050 5' -50.9 NC_004680.1 + 12951 0.66 0.911176
Target:  5'- --aGCCACCGAggaCGGAacaggccGGACGuCGCg -3'
miRNA:   3'- augCGGUGGCUaa-GUCUa------UCUGU-GCG- -5'
18050 5' -50.9 NC_004680.1 + 7145 0.66 0.909178
Target:  5'- -gUGCCGCCGAacuguuuagcugucUUCuGGGcAGGCGCGUa -3'
miRNA:   3'- auGCGGUGGCU--------------AAG-UCUaUCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 12380 0.66 0.904414
Target:  5'- cGCcCCACUGGUcgGGAUGGGCACa- -3'
miRNA:   3'- aUGcGGUGGCUAagUCUAUCUGUGcg -5'
18050 5' -50.9 NC_004680.1 + 59284 0.67 0.897365
Target:  5'- aUGCGCC-UCGGcgCGGGacuUGGGCGCGUg -3'
miRNA:   3'- -AUGCGGuGGCUaaGUCU---AUCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 56470 0.67 0.897365
Target:  5'- cUGCGCCGCUGuugguggcgUCgaGGAgcgcGGACACGUa -3'
miRNA:   3'- -AUGCGGUGGCua-------AG--UCUa---UCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 33545 0.67 0.890034
Target:  5'- -uCGCCGCCGGUUUccuGAcGGGCGCccGCc -3'
miRNA:   3'- auGCGGUGGCUAAGu--CUaUCUGUG--CG- -5'
18050 5' -50.9 NC_004680.1 + 5615 0.67 0.890034
Target:  5'- aACGCCAucuCCGcGUUCAcGAcaacGACACGCc -3'
miRNA:   3'- aUGCGGU---GGC-UAAGU-CUau--CUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 10386 0.67 0.890034
Target:  5'- aAUGCUGCCGGguucgcgaaagcUUCuGGU-GACACGCu -3'
miRNA:   3'- aUGCGGUGGCU------------AAGuCUAuCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 4803 0.67 0.882426
Target:  5'- cGCGCCACaucacUUCGGAUGcguuCACGCu -3'
miRNA:   3'- aUGCGGUGgcu--AAGUCUAUcu--GUGCG- -5'
18050 5' -50.9 NC_004680.1 + 3211 0.67 0.882426
Target:  5'- -cCGCUGCCGAUgCuGAUgccGGACAgCGCg -3'
miRNA:   3'- auGCGGUGGCUAaGuCUA---UCUGU-GCG- -5'
18050 5' -50.9 NC_004680.1 + 21311 0.67 0.874545
Target:  5'- gGgGCCACgGuGUUCGcGGUGGugGCGUg -3'
miRNA:   3'- aUgCGGUGgC-UAAGU-CUAUCugUGCG- -5'
18050 5' -50.9 NC_004680.1 + 47617 0.67 0.874545
Target:  5'- cGCGCCACCGucgaGGcGUGGGCugaGCa -3'
miRNA:   3'- aUGCGGUGGCuaagUC-UAUCUGug-CG- -5'
18050 5' -50.9 NC_004680.1 + 27843 0.67 0.8664
Target:  5'- --gGCgGCCGGacgguGGUGGACGCGCu -3'
miRNA:   3'- augCGgUGGCUaagu-CUAUCUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.