miRNA display CGI


Results 1 - 20 of 46 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18050 5' -50.9 NC_004680.1 + 1601 0.97 0.019122
Target:  5'- uUACGCCACCGA-UUAGAUAGACACGCu -3'
miRNA:   3'- -AUGCGGUGGCUaAGUCUAUCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 2365 0.69 0.792709
Target:  5'- cACGUCugCGGcguggcguucguUUCAGcgugAGGCGCGCa -3'
miRNA:   3'- aUGCGGugGCU------------AAGUCua--UCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 3211 0.67 0.882426
Target:  5'- -cCGCUGCCGAUgCuGAUgccGGACAgCGCg -3'
miRNA:   3'- auGCGGUGGCUAaGuCUA---UCUGU-GCG- -5'
18050 5' -50.9 NC_004680.1 + 4803 0.67 0.882426
Target:  5'- cGCGCCACaucacUUCGGAUGcguuCACGCu -3'
miRNA:   3'- aUGCGGUGgcu--AAGUCUAUcu--GUGCG- -5'
18050 5' -50.9 NC_004680.1 + 5615 0.67 0.890034
Target:  5'- aACGCCAucuCCGcGUUCAcGAcaacGACACGCc -3'
miRNA:   3'- aUGCGGU---GGC-UAAGU-CUau--CUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 5790 0.69 0.782584
Target:  5'- aUACGCagcaGCCGA--CGGAUGGA-ACGCg -3'
miRNA:   3'- -AUGCGg---UGGCUaaGUCUAUCUgUGCG- -5'
18050 5' -50.9 NC_004680.1 + 7071 0.67 0.8664
Target:  5'- aUGCGCCugCGGaUCAGu----CGCGCc -3'
miRNA:   3'- -AUGCGGugGCUaAGUCuaucuGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 7145 0.66 0.909178
Target:  5'- -gUGCCGCCGAacuguuuagcugucUUCuGGGcAGGCGCGUa -3'
miRNA:   3'- auGCGGUGGCU--------------AAG-UCUaUCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 7197 0.66 0.917649
Target:  5'- cACGCCACCaacaCAcGAUGGAUacucgGCGCu -3'
miRNA:   3'- aUGCGGUGGcuaaGU-CUAUCUG-----UGCG- -5'
18050 5' -50.9 NC_004680.1 + 8858 0.66 0.9138
Target:  5'- -uCGCCGCCGcgugaggugcggaucGUUCAGGUcguguuGGGCAUGg -3'
miRNA:   3'- auGCGGUGGC---------------UAAGUCUA------UCUGUGCg -5'
18050 5' -50.9 NC_004680.1 + 9101 0.66 0.926221
Target:  5'- aGCGUCGCCGAUuggcaUCAGGgcagguuguccaguuUAGAguUGCu -3'
miRNA:   3'- aUGCGGUGGCUA-----AGUCU---------------AUCUguGCG- -5'
18050 5' -50.9 NC_004680.1 + 10386 0.67 0.890034
Target:  5'- aAUGCUGCCGGguucgcgaaagcUUCuGGU-GACACGCu -3'
miRNA:   3'- aUGCGGUGGCU------------AAGuCUAuCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 11441 0.68 0.840448
Target:  5'- cAgGCCGCCGAgaugcgcaugUCGGAUGcGCGgGCg -3'
miRNA:   3'- aUgCGGUGGCUa---------AGUCUAUcUGUgCG- -5'
18050 5' -50.9 NC_004680.1 + 12324 0.7 0.740553
Target:  5'- gGCGaCCGCCGcUUCGGGU-GcCGCGCc -3'
miRNA:   3'- aUGC-GGUGGCuAAGUCUAuCuGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 12380 0.66 0.904414
Target:  5'- cGCcCCACUGGUcgGGAUGGGCACa- -3'
miRNA:   3'- aUGcGGUGGCUAagUCUAUCUGUGcg -5'
18050 5' -50.9 NC_004680.1 + 12567 0.7 0.729725
Target:  5'- --gGCCACCGGUgaaCAGGcuuuGugGCGCa -3'
miRNA:   3'- augCGGUGGCUAa--GUCUau--CugUGCG- -5'
18050 5' -50.9 NC_004680.1 + 12951 0.66 0.911176
Target:  5'- --aGCCACCGAggaCGGAacaggccGGACGuCGCg -3'
miRNA:   3'- augCGGUGGCUaa-GUCUa------UCUGU-GCG- -5'
18050 5' -50.9 NC_004680.1 + 13245 0.66 0.917649
Target:  5'- gGCGCCACCGAagaCGGcaucaccaacAUuGAUGCGCu -3'
miRNA:   3'- aUGCGGUGGCUaa-GUC----------UAuCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 14282 0.7 0.740553
Target:  5'- gAUGCCACCcuGUUCGGuccuGGCACGUu -3'
miRNA:   3'- aUGCGGUGGc-UAAGUCuau-CUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 16255 0.73 0.550491
Target:  5'- gUACGgCGCCGAggcugUCGGAUAGAacCGCu -3'
miRNA:   3'- -AUGCgGUGGCUa----AGUCUAUCUguGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.