miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18050 5' -50.9 NC_004680.1 + 17928 0.69 0.80167
Target:  5'- gAUGCCACCGAUaggCAGGaucgucaacagacUGGGCA-GCa -3'
miRNA:   3'- aUGCGGUGGCUAa--GUCU-------------AUCUGUgCG- -5'
18050 5' -50.9 NC_004680.1 + 18121 0.68 0.849343
Target:  5'- cGCGCCGauCCGGUUgCAGGUGGuGC-CGUa -3'
miRNA:   3'- aUGCGGU--GGCUAA-GUCUAUC-UGuGCG- -5'
18050 5' -50.9 NC_004680.1 + 18520 0.68 0.857996
Target:  5'- cACGCCGCCG---CGGAUagcGGACAC-Ca -3'
miRNA:   3'- aUGCGGUGGCuaaGUCUA---UCUGUGcG- -5'
18050 5' -50.9 NC_004680.1 + 19526 0.68 0.856285
Target:  5'- gGCGCCGCCGGUgguaacaccacguugUCuaucuccacaccgggGGGU-GACACGUa -3'
miRNA:   3'- aUGCGGUGGCUA---------------AG---------------UCUAuCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 19722 0.72 0.606473
Target:  5'- gUACGCCACCuGGUggagCGGGUaacggcgguaaGGGCGCGUu -3'
miRNA:   3'- -AUGCGGUGG-CUAa---GUCUA-----------UCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 21311 0.67 0.874545
Target:  5'- gGgGCCACgGuGUUCGcGGUGGugGCGUg -3'
miRNA:   3'- aUgCGGUGgC-UAAGU-CUAUCugUGCG- -5'
18050 5' -50.9 NC_004680.1 + 27843 0.67 0.8664
Target:  5'- --gGCgGCCGGacgguGGUGGACGCGCu -3'
miRNA:   3'- augCGgUGGCUaagu-CUAUCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 28715 0.67 0.8664
Target:  5'- cGCGCCACCacggCGGGguuuCACGCa -3'
miRNA:   3'- aUGCGGUGGcuaaGUCUaucuGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 28968 0.66 0.923831
Target:  5'- gACGCCGCCGAacgcgCGGccc-GCACGUu -3'
miRNA:   3'- aUGCGGUGGCUaa---GUCuaucUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 30357 0.69 0.812416
Target:  5'- cUGCGCUGgCGAUgu-GGUAGcCACGCa -3'
miRNA:   3'- -AUGCGGUgGCUAaguCUAUCuGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 33545 0.67 0.890034
Target:  5'- -uCGCCGCCGGUUUccuGAcGGGCGCccGCc -3'
miRNA:   3'- auGCGGUGGCUAAGu--CUaUCUGUG--CG- -5'
18050 5' -50.9 NC_004680.1 + 40813 0.71 0.685504
Target:  5'- gACGCgUugCGAaugCAGAUGGAC-CGCa -3'
miRNA:   3'- aUGCG-GugGCUaa-GUCUAUCUGuGCG- -5'
18050 5' -50.9 NC_004680.1 + 40932 0.7 0.740553
Target:  5'- gAgGCCcCCGAUUgGGAcccGGACugGCg -3'
miRNA:   3'- aUgCGGuGGCUAAgUCUa--UCUGugCG- -5'
18050 5' -50.9 NC_004680.1 + 42089 0.72 0.629095
Target:  5'- -gUGCCGCCGGgcgCAGAgguGGgGCGCa -3'
miRNA:   3'- auGCGGUGGCUaa-GUCUau-CUgUGCG- -5'
18050 5' -50.9 NC_004680.1 + 43709 0.68 0.849343
Target:  5'- gGgGCCACCGuugCAGuuccUGGAC-CGCg -3'
miRNA:   3'- aUgCGGUGGCuaaGUCu---AUCUGuGCG- -5'
18050 5' -50.9 NC_004680.1 + 44935 0.69 0.782584
Target:  5'- -cCGCCACCGugg-----GGACACGCg -3'
miRNA:   3'- auGCGGUGGCuaagucuaUCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 46569 0.68 0.857996
Target:  5'- uUACGCCGa-GAUUC-GAaGGugGCGCa -3'
miRNA:   3'- -AUGCGGUggCUAAGuCUaUCugUGCG- -5'
18050 5' -50.9 NC_004680.1 + 47469 0.69 0.812416
Target:  5'- -cCGCCGgCGAagcgaagguccUCGGAUGGGCugGCc -3'
miRNA:   3'- auGCGGUgGCUa----------AGUCUAUCUGugCG- -5'
18050 5' -50.9 NC_004680.1 + 47617 0.67 0.874545
Target:  5'- cGCGCCACCGucgaGGcGUGGGCugaGCa -3'
miRNA:   3'- aUGCGGUGGCuaagUC-UAUCUGug-CG- -5'
18050 5' -50.9 NC_004680.1 + 48768 0.7 0.740553
Target:  5'- aGCGCgCGCaCGGUUugggauccggCAGAUuGGCACGCg -3'
miRNA:   3'- aUGCG-GUG-GCUAA----------GUCUAuCUGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.