Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18050 | 5' | -50.9 | NC_004680.1 | + | 43709 | 0.68 | 0.849343 |
Target: 5'- gGgGCCACCGuugCAGuuccUGGAC-CGCg -3' miRNA: 3'- aUgCGGUGGCuaaGUCu---AUCUGuGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 19526 | 0.68 | 0.856285 |
Target: 5'- gGCGCCGCCGGUgguaacaccacguugUCuaucuccacaccgggGGGU-GACACGUa -3' miRNA: 3'- aUGCGGUGGCUA---------------AG---------------UCUAuCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 46569 | 0.68 | 0.857996 |
Target: 5'- uUACGCCGa-GAUUC-GAaGGugGCGCa -3' miRNA: 3'- -AUGCGGUggCUAAGuCUaUCugUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 18520 | 0.68 | 0.857996 |
Target: 5'- cACGCCGCCG---CGGAUagcGGACAC-Ca -3' miRNA: 3'- aUGCGGUGGCuaaGUCUA---UCUGUGcG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 28715 | 0.67 | 0.8664 |
Target: 5'- cGCGCCACCacggCGGGguuuCACGCa -3' miRNA: 3'- aUGCGGUGGcuaaGUCUaucuGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 7071 | 0.67 | 0.8664 |
Target: 5'- aUGCGCCugCGGaUCAGu----CGCGCc -3' miRNA: 3'- -AUGCGGugGCUaAGUCuaucuGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 27843 | 0.67 | 0.8664 |
Target: 5'- --gGCgGCCGGacgguGGUGGACGCGCu -3' miRNA: 3'- augCGgUGGCUaagu-CUAUCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 47617 | 0.67 | 0.874545 |
Target: 5'- cGCGCCACCGucgaGGcGUGGGCugaGCa -3' miRNA: 3'- aUGCGGUGGCuaagUC-UAUCUGug-CG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 21311 | 0.67 | 0.874545 |
Target: 5'- gGgGCCACgGuGUUCGcGGUGGugGCGUg -3' miRNA: 3'- aUgCGGUGgC-UAAGU-CUAUCugUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 3211 | 0.67 | 0.882426 |
Target: 5'- -cCGCUGCCGAUgCuGAUgccGGACAgCGCg -3' miRNA: 3'- auGCGGUGGCUAaGuCUA---UCUGU-GCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 4803 | 0.67 | 0.882426 |
Target: 5'- cGCGCCACaucacUUCGGAUGcguuCACGCu -3' miRNA: 3'- aUGCGGUGgcu--AAGUCUAUcu--GUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 10386 | 0.67 | 0.890034 |
Target: 5'- aAUGCUGCCGGguucgcgaaagcUUCuGGU-GACACGCu -3' miRNA: 3'- aUGCGGUGGCU------------AAGuCUAuCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 33545 | 0.67 | 0.890034 |
Target: 5'- -uCGCCGCCGGUUUccuGAcGGGCGCccGCc -3' miRNA: 3'- auGCGGUGGCUAAGu--CUaUCUGUG--CG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 5615 | 0.67 | 0.890034 |
Target: 5'- aACGCCAucuCCGcGUUCAcGAcaacGACACGCc -3' miRNA: 3'- aUGCGGU---GGC-UAAGU-CUau--CUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 59284 | 0.67 | 0.897365 |
Target: 5'- aUGCGCC-UCGGcgCGGGacuUGGGCGCGUg -3' miRNA: 3'- -AUGCGGuGGCUaaGUCU---AUCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 56470 | 0.67 | 0.897365 |
Target: 5'- cUGCGCCGCUGuugguggcgUCgaGGAgcgcGGACACGUa -3' miRNA: 3'- -AUGCGGUGGCua-------AG--UCUa---UCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 12380 | 0.66 | 0.904414 |
Target: 5'- cGCcCCACUGGUcgGGAUGGGCACa- -3' miRNA: 3'- aUGcGGUGGCUAagUCUAUCUGUGcg -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 7145 | 0.66 | 0.909178 |
Target: 5'- -gUGCCGCCGAacuguuuagcugucUUCuGGGcAGGCGCGUa -3' miRNA: 3'- auGCGGUGGCU--------------AAG-UCUaUCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 12951 | 0.66 | 0.911176 |
Target: 5'- --aGCCACCGAggaCGGAacaggccGGACGuCGCg -3' miRNA: 3'- augCGGUGGCUaa-GUCUa------UCUGU-GCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 8858 | 0.66 | 0.9138 |
Target: 5'- -uCGCCGCCGcgugaggugcggaucGUUCAGGUcguguuGGGCAUGg -3' miRNA: 3'- auGCGGUGGC---------------UAAGUCUA------UCUGUGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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