Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18050 | 5' | -50.9 | NC_004680.1 | + | 40932 | 0.7 | 0.740553 |
Target: 5'- gAgGCCcCCGAUUgGGAcccGGACugGCg -3' miRNA: 3'- aUgCGGuGGCUAAgUCUa--UCUGugCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 48768 | 0.7 | 0.740553 |
Target: 5'- aGCGCgCGCaCGGUUugggauccggCAGAUuGGCACGCg -3' miRNA: 3'- aUGCG-GUG-GCUAA----------GUCUAuCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 2365 | 0.69 | 0.792709 |
Target: 5'- cACGUCugCGGcguggcguucguUUCAGcgugAGGCGCGCa -3' miRNA: 3'- aUGCGGugGCU------------AAGUCua--UCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 30357 | 0.69 | 0.812416 |
Target: 5'- cUGCGCUGgCGAUgu-GGUAGcCACGCa -3' miRNA: 3'- -AUGCGGUgGCUAaguCUAUCuGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 47469 | 0.69 | 0.812416 |
Target: 5'- -cCGCCGgCGAagcgaagguccUCGGAUGGGCugGCc -3' miRNA: 3'- auGCGGUgGCUa----------AGUCUAUCUGugCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 11441 | 0.68 | 0.840448 |
Target: 5'- cAgGCCGCCGAgaugcgcaugUCGGAUGcGCGgGCg -3' miRNA: 3'- aUgCGGUGGCUa---------AGUCUAUcUGUgCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 43709 | 0.68 | 0.849343 |
Target: 5'- gGgGCCACCGuugCAGuuccUGGAC-CGCg -3' miRNA: 3'- aUgCGGUGGCuaaGUCu---AUCUGuGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 7071 | 0.67 | 0.8664 |
Target: 5'- aUGCGCCugCGGaUCAGu----CGCGCc -3' miRNA: 3'- -AUGCGGugGCUaAGUCuaucuGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 28715 | 0.67 | 0.8664 |
Target: 5'- cGCGCCACCacggCGGGguuuCACGCa -3' miRNA: 3'- aUGCGGUGGcuaaGUCUaucuGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 18520 | 0.68 | 0.857996 |
Target: 5'- cACGCCGCCG---CGGAUagcGGACAC-Ca -3' miRNA: 3'- aUGCGGUGGCuaaGUCUA---UCUGUGcG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 17928 | 0.69 | 0.80167 |
Target: 5'- gAUGCCACCGAUaggCAGGaucgucaacagacUGGGCA-GCa -3' miRNA: 3'- aUGCGGUGGCUAa--GUCU-------------AUCUGUgCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 5790 | 0.69 | 0.782584 |
Target: 5'- aUACGCagcaGCCGA--CGGAUGGA-ACGCg -3' miRNA: 3'- -AUGCGg---UGGCUaaGUCUAUCUgUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 4803 | 0.67 | 0.882426 |
Target: 5'- cGCGCCACaucacUUCGGAUGcguuCACGCu -3' miRNA: 3'- aUGCGGUGgcu--AAGUCUAUcu--GUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 5615 | 0.67 | 0.890034 |
Target: 5'- aACGCCAucuCCGcGUUCAcGAcaacGACACGCc -3' miRNA: 3'- aUGCGGU---GGC-UAAGU-CUau--CUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 59284 | 0.67 | 0.897365 |
Target: 5'- aUGCGCC-UCGGcgCGGGacuUGGGCGCGUg -3' miRNA: 3'- -AUGCGGuGGCUaaGUCU---AUCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 56470 | 0.67 | 0.897365 |
Target: 5'- cUGCGCCGCUGuugguggcgUCgaGGAgcgcGGACACGUa -3' miRNA: 3'- -AUGCGGUGGCua-------AG--UCUa---UCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 12380 | 0.66 | 0.904414 |
Target: 5'- cGCcCCACUGGUcgGGAUGGGCACa- -3' miRNA: 3'- aUGcGGUGGCUAagUCUAUCUGUGcg -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 7145 | 0.66 | 0.909178 |
Target: 5'- -gUGCCGCCGAacuguuuagcugucUUCuGGGcAGGCGCGUa -3' miRNA: 3'- auGCGGUGGCU--------------AAG-UCUaUCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 7197 | 0.66 | 0.917649 |
Target: 5'- cACGCCACCaacaCAcGAUGGAUacucgGCGCu -3' miRNA: 3'- aUGCGGUGGcuaaGU-CUAUCUG-----UGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 1601 | 0.97 | 0.019122 |
Target: 5'- uUACGCCACCGA-UUAGAUAGACACGCu -3' miRNA: 3'- -AUGCGGUGGCUaAGUCUAUCUGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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