miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18050 5' -50.9 NC_004680.1 + 10386 0.67 0.890034
Target:  5'- aAUGCUGCCGGguucgcgaaagcUUCuGGU-GACACGCu -3'
miRNA:   3'- aUGCGGUGGCU------------AAGuCUAuCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 18121 0.68 0.849343
Target:  5'- cGCGCCGauCCGGUUgCAGGUGGuGC-CGUa -3'
miRNA:   3'- aUGCGGU--GGCUAA-GUCUAUC-UGuGCG- -5'
18050 5' -50.9 NC_004680.1 + 19526 0.68 0.856285
Target:  5'- gGCGCCGCCGGUgguaacaccacguugUCuaucuccacaccgggGGGU-GACACGUa -3'
miRNA:   3'- aUGCGGUGGCUA---------------AG---------------UCUAuCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 46569 0.68 0.857996
Target:  5'- uUACGCCGa-GAUUC-GAaGGugGCGCa -3'
miRNA:   3'- -AUGCGGUggCUAAGuCUaUCugUGCG- -5'
18050 5' -50.9 NC_004680.1 + 27843 0.67 0.8664
Target:  5'- --gGCgGCCGGacgguGGUGGACGCGCu -3'
miRNA:   3'- augCGgUGGCUaagu-CUAUCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 47617 0.67 0.874545
Target:  5'- cGCGCCACCGucgaGGcGUGGGCugaGCa -3'
miRNA:   3'- aUGCGGUGGCuaagUC-UAUCUGug-CG- -5'
18050 5' -50.9 NC_004680.1 + 21311 0.67 0.874545
Target:  5'- gGgGCCACgGuGUUCGcGGUGGugGCGUg -3'
miRNA:   3'- aUgCGGUGgC-UAAGU-CUAUCugUGCG- -5'
18050 5' -50.9 NC_004680.1 + 3211 0.67 0.882426
Target:  5'- -cCGCUGCCGAUgCuGAUgccGGACAgCGCg -3'
miRNA:   3'- auGCGGUGGCUAaGuCUA---UCUGU-GCG- -5'
18050 5' -50.9 NC_004680.1 + 33545 0.67 0.890034
Target:  5'- -uCGCCGCCGGUUUccuGAcGGGCGCccGCc -3'
miRNA:   3'- auGCGGUGGCUAAGu--CUaUCUGUG--CG- -5'
18050 5' -50.9 NC_004680.1 + 43709 0.68 0.849343
Target:  5'- gGgGCCACCGuugCAGuuccUGGAC-CGCg -3'
miRNA:   3'- aUgCGGUGGCuaaGUCu---AUCUGuGCG- -5'
18050 5' -50.9 NC_004680.1 + 11441 0.68 0.840448
Target:  5'- cAgGCCGCCGAgaugcgcaugUCGGAUGcGCGgGCg -3'
miRNA:   3'- aUgCGGUGGCUa---------AGUCUAUcUGUgCG- -5'
18050 5' -50.9 NC_004680.1 + 47469 0.69 0.812416
Target:  5'- -cCGCCGgCGAagcgaagguccUCGGAUGGGCugGCc -3'
miRNA:   3'- auGCGGUgGCUa----------AGUCUAUCUGugCG- -5'
18050 5' -50.9 NC_004680.1 + 42089 0.72 0.629095
Target:  5'- -gUGCCGCCGGgcgCAGAgguGGgGCGCa -3'
miRNA:   3'- auGCGGUGGCUaa-GUCUau-CUgUGCG- -5'
18050 5' -50.9 NC_004680.1 + 56717 0.71 0.696671
Target:  5'- aACGCCuACCGGcaaUGGuUGGACGCGCa -3'
miRNA:   3'- aUGCGG-UGGCUaa-GUCuAUCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 12324 0.7 0.740553
Target:  5'- gGCGaCCGCCGcUUCGGGU-GcCGCGCc -3'
miRNA:   3'- aUGC-GGUGGCuAAGUCUAuCuGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 14282 0.7 0.740553
Target:  5'- gAUGCCACCcuGUUCGGuccuGGCACGUu -3'
miRNA:   3'- aUGCGGUGGc-UAAGUCuau-CUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 40932 0.7 0.740553
Target:  5'- gAgGCCcCCGAUUgGGAcccGGACugGCg -3'
miRNA:   3'- aUgCGGuGGCUAAgUCUa--UCUGugCG- -5'
18050 5' -50.9 NC_004680.1 + 48768 0.7 0.740553
Target:  5'- aGCGCgCGCaCGGUUugggauccggCAGAUuGGCACGCg -3'
miRNA:   3'- aUGCG-GUG-GCUAA----------GUCUAuCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 2365 0.69 0.792709
Target:  5'- cACGUCugCGGcguggcguucguUUCAGcgugAGGCGCGCa -3'
miRNA:   3'- aUGCGGugGCU------------AAGUCua--UCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 30357 0.69 0.812416
Target:  5'- cUGCGCUGgCGAUgu-GGUAGcCACGCa -3'
miRNA:   3'- -AUGCGGUgGCUAaguCUAUCuGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.