miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18050 5' -50.9 NC_004680.1 + 1601 0.97 0.019122
Target:  5'- uUACGCCACCGA-UUAGAUAGACACGCu -3'
miRNA:   3'- -AUGCGGUGGCUaAGUCUAUCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 16255 0.73 0.550491
Target:  5'- gUACGgCGCCGAggcugUCGGAUAGAacCGCu -3'
miRNA:   3'- -AUGCgGUGGCUa----AGUCUAUCUguGCG- -5'
18050 5' -50.9 NC_004680.1 + 19722 0.72 0.606473
Target:  5'- gUACGCCACCuGGUggagCGGGUaacggcgguaaGGGCGCGUu -3'
miRNA:   3'- -AUGCGGUGG-CUAa---GUCUA-----------UCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 48891 0.72 0.606473
Target:  5'- cUGCGCCACCacuUUCcGAUgcugGGACGCGUg -3'
miRNA:   3'- -AUGCGGUGGcu-AAGuCUA----UCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 42089 0.72 0.629095
Target:  5'- -gUGCCGCCGGgcgCAGAgguGGgGCGCa -3'
miRNA:   3'- auGCGGUGGCUaa-GUCUau-CUgUGCG- -5'
18050 5' -50.9 NC_004680.1 + 40813 0.71 0.685504
Target:  5'- gACGCgUugCGAaugCAGAUGGAC-CGCa -3'
miRNA:   3'- aUGCG-GugGCUaa-GUCUAUCUGuGCG- -5'
18050 5' -50.9 NC_004680.1 + 56717 0.71 0.696671
Target:  5'- aACGCCuACCGGcaaUGGuUGGACGCGCa -3'
miRNA:   3'- aUGCGG-UGGCUaa-GUCuAUCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 12567 0.7 0.729725
Target:  5'- --gGCCACCGGUgaaCAGGcuuuGugGCGCa -3'
miRNA:   3'- augCGGUGGCUAa--GUCUau--CugUGCG- -5'
18050 5' -50.9 NC_004680.1 + 48768 0.7 0.740553
Target:  5'- aGCGCgCGCaCGGUUugggauccggCAGAUuGGCACGCg -3'
miRNA:   3'- aUGCG-GUG-GCUAA----------GUCUAuCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 12324 0.7 0.740553
Target:  5'- gGCGaCCGCCGcUUCGGGU-GcCGCGCc -3'
miRNA:   3'- aUGC-GGUGGCuAAGUCUAuCuGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 14282 0.7 0.740553
Target:  5'- gAUGCCACCcuGUUCGGuccuGGCACGUu -3'
miRNA:   3'- aUGCGGUGGc-UAAGUCuau-CUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 40932 0.7 0.740553
Target:  5'- gAgGCCcCCGAUUgGGAcccGGACugGCg -3'
miRNA:   3'- aUgCGGuGGCUAAgUCUa--UCUGugCG- -5'
18050 5' -50.9 NC_004680.1 + 5790 0.69 0.782584
Target:  5'- aUACGCagcaGCCGA--CGGAUGGA-ACGCg -3'
miRNA:   3'- -AUGCGg---UGGCUaaGUCUAUCUgUGCG- -5'
18050 5' -50.9 NC_004680.1 + 44935 0.69 0.782584
Target:  5'- -cCGCCACCGugg-----GGACACGCg -3'
miRNA:   3'- auGCGGUGGCuaagucuaUCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 2365 0.69 0.792709
Target:  5'- cACGUCugCGGcguggcguucguUUCAGcgugAGGCGCGCa -3'
miRNA:   3'- aUGCGGugGCU------------AAGUCua--UCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 17928 0.69 0.80167
Target:  5'- gAUGCCACCGAUaggCAGGaucgucaacagacUGGGCA-GCa -3'
miRNA:   3'- aUGCGGUGGCUAa--GUCU-------------AUCUGUgCG- -5'
18050 5' -50.9 NC_004680.1 + 47469 0.69 0.812416
Target:  5'- -cCGCCGgCGAagcgaagguccUCGGAUGGGCugGCc -3'
miRNA:   3'- auGCGGUgGCUa----------AGUCUAUCUGugCG- -5'
18050 5' -50.9 NC_004680.1 + 30357 0.69 0.812416
Target:  5'- cUGCGCUGgCGAUgu-GGUAGcCACGCa -3'
miRNA:   3'- -AUGCGGUgGCUAaguCUAUCuGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 11441 0.68 0.840448
Target:  5'- cAgGCCGCCGAgaugcgcaugUCGGAUGcGCGgGCg -3'
miRNA:   3'- aUgCGGUGGCUa---------AGUCUAUcUGUgCG- -5'
18050 5' -50.9 NC_004680.1 + 18121 0.68 0.849343
Target:  5'- cGCGCCGauCCGGUUgCAGGUGGuGC-CGUa -3'
miRNA:   3'- aUGCGGU--GGCUAA-GUCUAUC-UGuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.