miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18050 5' -50.9 NC_004680.1 + 56749 0.66 0.923831
Target:  5'- cGgGCCACUGAUguggCGG--GGACGuCGCa -3'
miRNA:   3'- aUgCGGUGGCUAa---GUCuaUCUGU-GCG- -5'
18050 5' -50.9 NC_004680.1 + 17928 0.69 0.80167
Target:  5'- gAUGCCACCGAUaggCAGGaucgucaacagacUGGGCA-GCa -3'
miRNA:   3'- aUGCGGUGGCUAa--GUCU-------------AUCUGUgCG- -5'
18050 5' -50.9 NC_004680.1 + 7071 0.67 0.8664
Target:  5'- aUGCGCCugCGGaUCAGu----CGCGCc -3'
miRNA:   3'- -AUGCGGugGCUaAGUCuaucuGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 4803 0.67 0.882426
Target:  5'- cGCGCCACaucacUUCGGAUGcguuCACGCu -3'
miRNA:   3'- aUGCGGUGgcu--AAGUCUAUcu--GUGCG- -5'
18050 5' -50.9 NC_004680.1 + 59284 0.67 0.897365
Target:  5'- aUGCGCC-UCGGcgCGGGacuUGGGCGCGUg -3'
miRNA:   3'- -AUGCGGuGGCUaaGUCU---AUCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 56470 0.67 0.897365
Target:  5'- cUGCGCCGCUGuugguggcgUCgaGGAgcgcGGACACGUa -3'
miRNA:   3'- -AUGCGGUGGCua-------AG--UCUa---UCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 16255 0.73 0.550491
Target:  5'- gUACGgCGCCGAggcugUCGGAUAGAacCGCu -3'
miRNA:   3'- -AUGCgGUGGCUa----AGUCUAUCUguGCG- -5'
18050 5' -50.9 NC_004680.1 + 48891 0.72 0.606473
Target:  5'- cUGCGCCACCacuUUCcGAUgcugGGACGCGUg -3'
miRNA:   3'- -AUGCGGUGGcu-AAGuCUA----UCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 44935 0.69 0.782584
Target:  5'- -cCGCCACCGugg-----GGACACGCg -3'
miRNA:   3'- auGCGGUGGCuaagucuaUCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 18520 0.68 0.857996
Target:  5'- cACGCCGCCG---CGGAUagcGGACAC-Ca -3'
miRNA:   3'- aUGCGGUGGCuaaGUCUA---UCUGUGcG- -5'
18050 5' -50.9 NC_004680.1 + 5615 0.67 0.890034
Target:  5'- aACGCCAucuCCGcGUUCAcGAcaacGACACGCc -3'
miRNA:   3'- aUGCGGU---GGC-UAAGU-CUau--CUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 7197 0.66 0.917649
Target:  5'- cACGCCACCaacaCAcGAUGGAUacucgGCGCu -3'
miRNA:   3'- aUGCGGUGGcuaaGU-CUAUCUG-----UGCG- -5'
18050 5' -50.9 NC_004680.1 + 12567 0.7 0.729725
Target:  5'- --gGCCACCGGUgaaCAGGcuuuGugGCGCa -3'
miRNA:   3'- augCGGUGGCUAa--GUCUau--CugUGCG- -5'
18050 5' -50.9 NC_004680.1 + 7145 0.66 0.909178
Target:  5'- -gUGCCGCCGAacuguuuagcugucUUCuGGGcAGGCGCGUa -3'
miRNA:   3'- auGCGGUGGCU--------------AAG-UCUaUCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 28715 0.67 0.8664
Target:  5'- cGCGCCACCacggCGGGguuuCACGCa -3'
miRNA:   3'- aUGCGGUGGcuaaGUCUaucuGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 40813 0.71 0.685504
Target:  5'- gACGCgUugCGAaugCAGAUGGAC-CGCa -3'
miRNA:   3'- aUGCG-GugGCUaa-GUCUAUCUGuGCG- -5'
18050 5' -50.9 NC_004680.1 + 1601 0.97 0.019122
Target:  5'- uUACGCCACCGA-UUAGAUAGACACGCu -3'
miRNA:   3'- -AUGCGGUGGCUaAGUCUAUCUGUGCG- -5'
18050 5' -50.9 NC_004680.1 + 12380 0.66 0.904414
Target:  5'- cGCcCCACUGGUcgGGAUGGGCACa- -3'
miRNA:   3'- aUGcGGUGGCUAagUCUAUCUGUGcg -5'
18050 5' -50.9 NC_004680.1 + 5790 0.69 0.782584
Target:  5'- aUACGCagcaGCCGA--CGGAUGGA-ACGCg -3'
miRNA:   3'- -AUGCGg---UGGCUaaGUCUAUCUgUGCG- -5'
18050 5' -50.9 NC_004680.1 + 46569 0.68 0.857996
Target:  5'- uUACGCCGa-GAUUC-GAaGGugGCGCa -3'
miRNA:   3'- -AUGCGGUggCUAAGuCUaUCugUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.