Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18050 | 5' | -50.9 | NC_004680.1 | + | 59284 | 0.67 | 0.897365 |
Target: 5'- aUGCGCC-UCGGcgCGGGacuUGGGCGCGUg -3' miRNA: 3'- -AUGCGGuGGCUaaGUCU---AUCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 58867 | 0.66 | 0.92972 |
Target: 5'- uUGCGCCACUGAc-CAuAUGGA-ACGCa -3' miRNA: 3'- -AUGCGGUGGCUaaGUcUAUCUgUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 56749 | 0.66 | 0.923831 |
Target: 5'- cGgGCCACUGAUguggCGG--GGACGuCGCa -3' miRNA: 3'- aUgCGGUGGCUAa---GUCuaUCUGU-GCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 56717 | 0.71 | 0.696671 |
Target: 5'- aACGCCuACCGGcaaUGGuUGGACGCGCa -3' miRNA: 3'- aUGCGG-UGGCUaa-GUCuAUCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 56470 | 0.67 | 0.897365 |
Target: 5'- cUGCGCCGCUGuugguggcgUCgaGGAgcgcGGACACGUa -3' miRNA: 3'- -AUGCGGUGGCua-------AG--UCUa---UCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 48891 | 0.72 | 0.606473 |
Target: 5'- cUGCGCCACCacuUUCcGAUgcugGGACGCGUg -3' miRNA: 3'- -AUGCGGUGGcu-AAGuCUA----UCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 48768 | 0.7 | 0.740553 |
Target: 5'- aGCGCgCGCaCGGUUugggauccggCAGAUuGGCACGCg -3' miRNA: 3'- aUGCG-GUG-GCUAA----------GUCUAuCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 47617 | 0.67 | 0.874545 |
Target: 5'- cGCGCCACCGucgaGGcGUGGGCugaGCa -3' miRNA: 3'- aUGCGGUGGCuaagUC-UAUCUGug-CG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 47469 | 0.69 | 0.812416 |
Target: 5'- -cCGCCGgCGAagcgaagguccUCGGAUGGGCugGCc -3' miRNA: 3'- auGCGGUgGCUa----------AGUCUAUCUGugCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 46569 | 0.68 | 0.857996 |
Target: 5'- uUACGCCGa-GAUUC-GAaGGugGCGCa -3' miRNA: 3'- -AUGCGGUggCUAAGuCUaUCugUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 44935 | 0.69 | 0.782584 |
Target: 5'- -cCGCCACCGugg-----GGACACGCg -3' miRNA: 3'- auGCGGUGGCuaagucuaUCUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 43709 | 0.68 | 0.849343 |
Target: 5'- gGgGCCACCGuugCAGuuccUGGAC-CGCg -3' miRNA: 3'- aUgCGGUGGCuaaGUCu---AUCUGuGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 42089 | 0.72 | 0.629095 |
Target: 5'- -gUGCCGCCGGgcgCAGAgguGGgGCGCa -3' miRNA: 3'- auGCGGUGGCUaa-GUCUau-CUgUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 40932 | 0.7 | 0.740553 |
Target: 5'- gAgGCCcCCGAUUgGGAcccGGACugGCg -3' miRNA: 3'- aUgCGGuGGCUAAgUCUa--UCUGugCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 40813 | 0.71 | 0.685504 |
Target: 5'- gACGCgUugCGAaugCAGAUGGAC-CGCa -3' miRNA: 3'- aUGCG-GugGCUaa-GUCUAUCUGuGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 33545 | 0.67 | 0.890034 |
Target: 5'- -uCGCCGCCGGUUUccuGAcGGGCGCccGCc -3' miRNA: 3'- auGCGGUGGCUAAGu--CUaUCUGUG--CG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 30357 | 0.69 | 0.812416 |
Target: 5'- cUGCGCUGgCGAUgu-GGUAGcCACGCa -3' miRNA: 3'- -AUGCGGUgGCUAaguCUAUCuGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 28968 | 0.66 | 0.923831 |
Target: 5'- gACGCCGCCGAacgcgCGGccc-GCACGUu -3' miRNA: 3'- aUGCGGUGGCUaa---GUCuaucUGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 28715 | 0.67 | 0.8664 |
Target: 5'- cGCGCCACCacggCGGGguuuCACGCa -3' miRNA: 3'- aUGCGGUGGcuaaGUCUaucuGUGCG- -5' |
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18050 | 5' | -50.9 | NC_004680.1 | + | 27843 | 0.67 | 0.8664 |
Target: 5'- --gGCgGCCGGacgguGGUGGACGCGCu -3' miRNA: 3'- augCGgUGGCUaagu-CUAUCUGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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