Results 21 - 40 of 112 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18057 | 5' | -60.4 | NC_004680.1 | + | 13252 | 0.68 | 0.357739 |
Target: 5'- gUGCACCAUUuCUGGU-GCGGCGGuCCg -3' miRNA: 3'- -AUGUGGUGGuGGCCGcCGCCGCUuGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 43619 | 0.67 | 0.390601 |
Target: 5'- --gGCCGCC-CUGGUcgaacguGGCGGCGucgcAACCg -3' miRNA: 3'- augUGGUGGuGGCCG-------CCGCCGC----UUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 42532 | 0.66 | 0.449554 |
Target: 5'- cGCGCC-CCGCCucaugcgacaccccuGaGCGGCGGaUGAACg -3' miRNA: 3'- aUGUGGuGGUGG---------------C-CGCCGCC-GCUUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 25421 | 0.66 | 0.474473 |
Target: 5'- gACGCCGa-ACUGGCGGCccucgucuacgaGGCGAugACUg -3' miRNA: 3'- aUGUGGUggUGGCCGCCG------------CCGCU--UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 39700 | 0.7 | 0.262664 |
Target: 5'- gGCGCUcCCugCGGCGcuccauGCGGCGcuCCa -3' miRNA: 3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 27433 | 0.69 | 0.311076 |
Target: 5'- cACACCACCAUCGGauGCcuGCGAGa- -3' miRNA: 3'- aUGUGGUGGUGGCCgcCGc-CGCUUgg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 12431 | 0.67 | 0.39147 |
Target: 5'- aGCACCAgacgcgggacuCC-CCGGCGcggcacccgaaGCGGCGGucGCCc -3' miRNA: 3'- aUGUGGU-----------GGuGGCCGC-----------CGCCGCU--UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 14699 | 0.66 | 0.474473 |
Target: 5'- cUGCGCCGguUCGCCaGGCGacuucGCGGgGAucGCCg -3' miRNA: 3'- -AUGUGGU--GGUGG-CCGC-----CGCCgCU--UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 971 | 0.69 | 0.318521 |
Target: 5'- gACGCC-CCACCGGauugcCGGCaGCGucaAACCc -3' miRNA: 3'- aUGUGGuGGUGGCC-----GCCGcCGC---UUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 39384 | 0.66 | 0.484241 |
Target: 5'- -cCAUCugCACCagGGCGGCcagugGGCGuGCUg -3' miRNA: 3'- auGUGGugGUGG--CCGCCG-----CCGCuUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 28715 | 0.67 | 0.39147 |
Target: 5'- cGCGCCACCA-CGGCGG-GGUuucacgcauGCCg -3' miRNA: 3'- aUGUGGUGGUgGCCGCCgCCGcu-------UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 21441 | 0.68 | 0.356922 |
Target: 5'- gGCGCCGCCauacgugGCCGaCGG-GGCuGAGCCc -3' miRNA: 3'- aUGUGGUGG-------UGGCcGCCgCCG-CUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 37157 | 0.67 | 0.418091 |
Target: 5'- gACGCCAaC-CUGGCGGCuGCcAGCCg -3' miRNA: 3'- aUGUGGUgGuGGCCGCCGcCGcUUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 19517 | 0.67 | 0.427206 |
Target: 5'- -uCACCGCgCACCcauGUGGUGGCGuugaacuuACCg -3' miRNA: 3'- auGUGGUG-GUGGc--CGCCGCCGCu-------UGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 26040 | 0.66 | 0.471562 |
Target: 5'- gACAUCACCAUCgucuucgauGGUcaccacggcaucauGGCGGCGGAUa -3' miRNA: 3'- aUGUGGUGGUGG---------CCG--------------CCGCCGCUUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 33970 | 0.66 | 0.474473 |
Target: 5'- cUGCAUCGCCACauacaaCGGCGGCaacaacGGC--ACCu -3' miRNA: 3'- -AUGUGGUGGUG------GCCGCCG------CCGcuUGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 39892 | 0.7 | 0.262664 |
Target: 5'- gGCGCUcCCugCGGCGcucccuGCGGCGcuCCa -3' miRNA: 3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 39736 | 0.7 | 0.262664 |
Target: 5'- gGCGCUcCCugCGGCGcucccuGCGGCGcuCCg -3' miRNA: 3'- aUGUGGuGGugGCCGC------CGCCGCuuGG- -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 57635 | 0.7 | 0.282622 |
Target: 5'- gGCACCACCAaacCCGG-GGCGGa-GACa -3' miRNA: 3'- aUGUGGUGGU---GGCCgCCGCCgcUUGg -5' |
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18057 | 5' | -60.4 | NC_004680.1 | + | 55871 | 0.69 | 0.303763 |
Target: 5'- --gGCCAUCGCgagggUGGCGGCuuuGGCGAGCg -3' miRNA: 3'- augUGGUGGUG-----GCCGCCG---CCGCUUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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