miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18066 5' -49.9 NC_004680.1 + 35805 0.66 0.973598
Target:  5'- cGGAGCGcUGCGugCAguugcCGACGUGACGc -3'
miRNA:   3'- -CCUUGUaGUGCugGUa----GCUGUGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 7367 0.66 0.973598
Target:  5'- cGGccuCAUUcucaGCGGCCucAUCaGACGCGGCGa -3'
miRNA:   3'- -CCuu-GUAG----UGCUGG--UAG-CUGUGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 40525 0.66 0.970574
Target:  5'- uGGGGCucugCACG--CGUCGugGCGugGg -3'
miRNA:   3'- -CCUUGua--GUGCugGUAGCugUGCugC- -5'
18066 5' -49.9 NC_004680.1 + 35474 0.66 0.970574
Target:  5'- aGAACA--ACGACgCAUCGAaacCGCGGCc -3'
miRNA:   3'- cCUUGUagUGCUG-GUAGCU---GUGCUGc -5'
18066 5' -49.9 NC_004680.1 + 21751 0.66 0.968646
Target:  5'- gGGAACggugagugccaccucGUCGCGGCCGaauaagugggcUGGCAUGGCGg -3'
miRNA:   3'- -CCUUG---------------UAGUGCUGGUa----------GCUGUGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 28551 0.66 0.967311
Target:  5'- cGAACucgGUCACGugUGggcCGAuCACGGCGg -3'
miRNA:   3'- cCUUG---UAGUGCugGUa--GCU-GUGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 13651 0.66 0.963799
Target:  5'- uGAACGUguCGGUCAUCGACucguaGACGa -3'
miRNA:   3'- cCUUGUAguGCUGGUAGCUGug---CUGC- -5'
18066 5' -49.9 NC_004680.1 + 20857 0.66 0.963799
Target:  5'- uGAACAUguCaGCgAUCGACGCuGGCGg -3'
miRNA:   3'- cCUUGUAguGcUGgUAGCUGUG-CUGC- -5'
18066 5' -49.9 NC_004680.1 + 58052 0.66 0.963434
Target:  5'- uGGAaaccguaggcgccGCAUaCAUGAaCAUCGACaACGGCGc -3'
miRNA:   3'- -CCU-------------UGUA-GUGCUgGUAGCUG-UGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 15420 0.66 0.96157
Target:  5'- cGGAcugcaaccgcaaagcGCAUUcuGCGACCAuguUCucCACGACGg -3'
miRNA:   3'- -CCU---------------UGUAG--UGCUGGU---AGcuGUGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 13442 0.67 0.951262
Target:  5'- -uGGCGUCgaucgauGCGACCAgaucgcgguaGACGCGGCGa -3'
miRNA:   3'- ccUUGUAG-------UGCUGGUag--------CUGUGCUGC- -5'
18066 5' -49.9 NC_004680.1 + 44689 0.67 0.940784
Target:  5'- cGGAACAgCGCGACgGaaucgaguaugaguUCGACGuuguCGGCGa -3'
miRNA:   3'- -CCUUGUaGUGCUGgU--------------AGCUGU----GCUGC- -5'
18066 5' -49.9 NC_004680.1 + 29512 0.67 0.937167
Target:  5'- cGAacGCAUCgaagGCGACaagCGACGCGACc -3'
miRNA:   3'- cCU--UGUAG----UGCUGguaGCUGUGCUGc -5'
18066 5' -49.9 NC_004680.1 + 49226 0.67 0.937167
Target:  5'- aGAGCAUUuaGCGACC-UCGccguCGCGGCu -3'
miRNA:   3'- cCUUGUAG--UGCUGGuAGCu---GUGCUGc -5'
18066 5' -49.9 NC_004680.1 + 50239 0.68 0.93176
Target:  5'- aGGugGUCGaGACCGUCGAagaacuCGACGc -3'
miRNA:   3'- cCUugUAGUgCUGGUAGCUgu----GCUGC- -5'
18066 5' -49.9 NC_004680.1 + 47152 0.68 0.930083
Target:  5'- cGGACcgUACGACUcaccccccaucgucGUCGACACGGa- -3'
miRNA:   3'- cCUUGuaGUGCUGG--------------UAGCUGUGCUgc -5'
18066 5' -49.9 NC_004680.1 + 35996 0.68 0.913841
Target:  5'- gGGGACuAUCACGACCGcauacCGGC-CGAgGc -3'
miRNA:   3'- -CCUUG-UAGUGCUGGUa----GCUGuGCUgC- -5'
18066 5' -49.9 NC_004680.1 + 23942 0.68 0.913841
Target:  5'- -cGACGUCAC-ACCAUCGACAUa--- -3'
miRNA:   3'- ccUUGUAGUGcUGGUAGCUGUGcugc -5'
18066 5' -49.9 NC_004680.1 + 37952 0.68 0.913841
Target:  5'- uGAGCGUCugcggGCGGCCAUCGA-ACGGg- -3'
miRNA:   3'- cCUUGUAG-----UGCUGGUAGCUgUGCUgc -5'
18066 5' -49.9 NC_004680.1 + 58564 0.68 0.907305
Target:  5'- uGGAAa--CACGGCgGacgCGACACGugGg -3'
miRNA:   3'- -CCUUguaGUGCUGgUa--GCUGUGCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.