Results 1 - 20 of 41 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18066 | 5' | -49.9 | NC_004680.1 | + | 58564 | 0.68 | 0.907305 |
Target: 5'- uGGAAa--CACGGCgGacgCGACACGugGg -3' miRNA: 3'- -CCUUguaGUGCUGgUa--GCUGUGCugC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 58052 | 0.66 | 0.963434 |
Target: 5'- uGGAaaccguaggcgccGCAUaCAUGAaCAUCGACaACGGCGc -3' miRNA: 3'- -CCU-------------UGUA-GUGCUgGUAGCUG-UGCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 57485 | 0.71 | 0.798991 |
Target: 5'- uGGGuucCAg-GCGGCCGUCGucCACGACGa -3' miRNA: 3'- -CCUu--GUagUGCUGGUAGCu-GUGCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 56323 | 0.69 | 0.878409 |
Target: 5'- cGGGCGUUAC-ACCAucuucgUCGACgACGACGa -3' miRNA: 3'- cCUUGUAGUGcUGGU------AGCUG-UGCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 50749 | 0.7 | 0.86238 |
Target: 5'- uGAACAcCGCGAUCGUgcuUGGCGCGAUa -3' miRNA: 3'- cCUUGUaGUGCUGGUA---GCUGUGCUGc -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 50239 | 0.68 | 0.93176 |
Target: 5'- aGGugGUCGaGACCGUCGAagaacuCGACGc -3' miRNA: 3'- cCUugUAGUgCUGGUAGCUgu----GCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 49226 | 0.67 | 0.937167 |
Target: 5'- aGAGCAUUuaGCGACC-UCGccguCGCGGCu -3' miRNA: 3'- cCUUGUAG--UGCUGGuAGCu---GUGCUGc -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 48266 | 0.71 | 0.814381 |
Target: 5'- uGGAACGuguUCACcccggagGGCCAauuuucggggucguUCGACACGugGg -3' miRNA: 3'- -CCUUGU---AGUG-------CUGGU--------------AGCUGUGCugC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 47612 | 0.75 | 0.561361 |
Target: 5'- cGAACcgCGCcACCGUCGAgGCGugGg -3' miRNA: 3'- cCUUGuaGUGcUGGUAGCUgUGCugC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 47152 | 0.68 | 0.930083 |
Target: 5'- cGGACcgUACGACUcaccccccaucgucGUCGACACGGa- -3' miRNA: 3'- cCUUGuaGUGCUGG--------------UAGCUGUGCUgc -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 44689 | 0.67 | 0.940784 |
Target: 5'- cGGAACAgCGCGACgGaaucgaguaugaguUCGACGuuguCGGCGa -3' miRNA: 3'- -CCUUGUaGUGCUGgU--------------AGCUGU----GCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 40525 | 0.66 | 0.970574 |
Target: 5'- uGGGGCucugCACG--CGUCGugGCGugGg -3' miRNA: 3'- -CCUUGua--GUGCugGUAGCugUGCugC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 38709 | 0.7 | 0.827438 |
Target: 5'- cGAACcgaaAUCACGGCCcagagcauUCGACAUGGCc -3' miRNA: 3'- cCUUG----UAGUGCUGGu-------AGCUGUGCUGc -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 37952 | 0.68 | 0.913841 |
Target: 5'- uGAGCGUCugcggGCGGCCAUCGA-ACGGg- -3' miRNA: 3'- cCUUGUAG-----UGCUGGUAGCUgUGCUgc -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 35996 | 0.68 | 0.913841 |
Target: 5'- gGGGACuAUCACGACCGcauacCGGC-CGAgGc -3' miRNA: 3'- -CCUUG-UAGUGCUGGUa----GCUGuGCUgC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 35805 | 0.66 | 0.973598 |
Target: 5'- cGGAGCGcUGCGugCAguugcCGACGUGACGc -3' miRNA: 3'- -CCUUGUaGUGCugGUa----GCUGUGCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 35474 | 0.66 | 0.970574 |
Target: 5'- aGAACA--ACGACgCAUCGAaacCGCGGCc -3' miRNA: 3'- cCUUGUagUGCUG-GUAGCU---GUGCUGc -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 35206 | 0.77 | 0.455977 |
Target: 5'- -aGACGcCGCGACCAgUGACACGACGc -3' miRNA: 3'- ccUUGUaGUGCUGGUaGCUGUGCUGC- -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 32092 | 0.75 | 0.594427 |
Target: 5'- uGGAucGCAUCgugGCGACCAUCGAC-CGGg- -3' miRNA: 3'- -CCU--UGUAG---UGCUGGUAGCUGuGCUgc -5' |
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18066 | 5' | -49.9 | NC_004680.1 | + | 29512 | 0.67 | 0.937167 |
Target: 5'- cGAacGCAUCgaagGCGACaagCGACGCGACc -3' miRNA: 3'- cCU--UGUAG----UGCUGguaGCUGUGCUGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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