miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18072 3' -56.1 NC_004680.1 + 22023 0.66 0.7215
Target:  5'- gCCAcggcGGCCAuGCCCACCuCGGgAGuGAgGGu -3'
miRNA:   3'- -GGU----UUGGU-UGGGUGG-GCCgUC-CUgCU- -5'
18072 3' -56.1 NC_004680.1 + 12265 0.66 0.7215
Target:  5'- aCGAACUGGCCCGCCCaaGGCGcuGGuguUGGu -3'
miRNA:   3'- gGUUUGGUUGGGUGGG--CCGU--CCu--GCU- -5'
18072 3' -56.1 NC_004680.1 + 30850 0.66 0.715216
Target:  5'- gUAGGCCAGCCCgacuaucugacggagGgCCUGGUgaaucguuacuGGGACGAa -3'
miRNA:   3'- gGUUUGGUUGGG---------------U-GGGCCG-----------UCCUGCU- -5'
18072 3' -56.1 NC_004680.1 + 15726 0.66 0.700446
Target:  5'- uCCAggUUcGCCCACCUGuCAGGcuGCGGa -3'
miRNA:   3'- -GGUuuGGuUGGGUGGGCcGUCC--UGCU- -5'
18072 3' -56.1 NC_004680.1 + 24118 0.66 0.700446
Target:  5'- aCCGAACCAucgaccggcACCCGCugauCCGaCAGG-CGAg -3'
miRNA:   3'- -GGUUUGGU---------UGGGUG----GGCcGUCCuGCU- -5'
18072 3' -56.1 NC_004680.1 + 11847 0.66 0.689818
Target:  5'- aCAcACCGGCCgCA-CCGGCAG-ACGGg -3'
miRNA:   3'- gGUuUGGUUGG-GUgGGCCGUCcUGCU- -5'
18072 3' -56.1 NC_004680.1 + 15520 0.67 0.679137
Target:  5'- aCAGA-CAGCCCAuCCCGcGaCAGGGCu- -3'
miRNA:   3'- gGUUUgGUUGGGU-GGGC-C-GUCCUGcu -5'
18072 3' -56.1 NC_004680.1 + 34350 0.67 0.679137
Target:  5'- gCCcuGCCGgggauggugaAUCC-CUCGGCAGGGCGc -3'
miRNA:   3'- -GGuuUGGU----------UGGGuGGGCCGUCCUGCu -5'
18072 3' -56.1 NC_004680.1 + 12428 0.67 0.668413
Target:  5'- aCCcAGCCccgcuGCCCACcaCCGGUGGuGGCGGc -3'
miRNA:   3'- -GGuUUGGu----UGGGUG--GGCCGUC-CUGCU- -5'
18072 3' -56.1 NC_004680.1 + 21122 0.67 0.668413
Target:  5'- aCCu--CCAACCC-CCCGGCcgcGGGGu-- -3'
miRNA:   3'- -GGuuuGGUUGGGuGGGCCG---UCCUgcu -5'
18072 3' -56.1 NC_004680.1 + 36051 0.67 0.657656
Target:  5'- -aAAACC--CCCGCCUGuCGGGGCGGg -3'
miRNA:   3'- ggUUUGGuuGGGUGGGCcGUCCUGCU- -5'
18072 3' -56.1 NC_004680.1 + 43984 0.67 0.653346
Target:  5'- cCCGAACCAACCCgucgaucugucgaaACCCugcgguucauugcGGCuuGGGAUGc -3'
miRNA:   3'- -GGUUUGGUUGGG--------------UGGG-------------CCG--UCCUGCu -5'
18072 3' -56.1 NC_004680.1 + 25875 0.67 0.646876
Target:  5'- cCCGGAgCGAgCU-CCCGGCAGGAg-- -3'
miRNA:   3'- -GGUUUgGUUgGGuGGGCCGUCCUgcu -5'
18072 3' -56.1 NC_004680.1 + 11026 0.67 0.636083
Target:  5'- gCC-AGCCGGCCC-CCCGGCcccGuCGAu -3'
miRNA:   3'- -GGuUUGGUUGGGuGGGCCGuc-CuGCU- -5'
18072 3' -56.1 NC_004680.1 + 17511 0.67 0.636083
Target:  5'- aCCGcAUgAGCCCACuCCGGCAacGGAUc- -3'
miRNA:   3'- -GGUuUGgUUGGGUG-GGCCGU--CCUGcu -5'
18072 3' -56.1 NC_004680.1 + 51528 0.67 0.625287
Target:  5'- uCCAcAGCCGAggaagucucCCCGCCacuGGUguAGGACGAg -3'
miRNA:   3'- -GGU-UUGGUU---------GGGUGGg--CCG--UCCUGCU- -5'
18072 3' -56.1 NC_004680.1 + 16969 0.67 0.625287
Target:  5'- aCCGAcucACCAucaucGCCUuuagcuCCCGcguGCAGGGCGAg -3'
miRNA:   3'- -GGUU---UGGU-----UGGGu-----GGGC---CGUCCUGCU- -5'
18072 3' -56.1 NC_004680.1 + 11166 0.67 0.625287
Target:  5'- gCCGGggccGCCAccaaGgCCGCCCGGCAGcaggaugccaucGACGGc -3'
miRNA:   3'- -GGUU----UGGU----UgGGUGGGCCGUC------------CUGCU- -5'
18072 3' -56.1 NC_004680.1 + 57841 0.68 0.614497
Target:  5'- aCCucuACC-ACCUAUCCGGU-GGugGAg -3'
miRNA:   3'- -GGuu-UGGuUGGGUGGGCCGuCCugCU- -5'
18072 3' -56.1 NC_004680.1 + 2968 0.68 0.613418
Target:  5'- cCCAuGCCAucaggguucugguACaCCACcaCCGGCGGcGGCGAa -3'
miRNA:   3'- -GGUuUGGU-------------UG-GGUG--GGCCGUC-CUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.