miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18073 3' -58.1 NC_004680.1 + 59108 0.71 0.322434
Target:  5'- cGGCGAacUCCacGCcgACCacauacaaccccgaUCACGCGGCGGCg -3'
miRNA:   3'- cUUGCU--AGG--CG--UGG--------------AGUGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 51616 0.66 0.577096
Target:  5'- aGGGCGAgCCGCGCUggaACGaCGGCaacguguggacuGGCg -3'
miRNA:   3'- -CUUGCUaGGCGUGGag-UGC-GCCG------------CCG- -5'
18073 3' -58.1 NC_004680.1 + 48413 0.69 0.445574
Target:  5'- cGGAUGAUCCGCGugUC-CugGaGGCGGUg -3'
miRNA:   3'- -CUUGCUAGGCGU--GGaGugCgCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 47709 0.67 0.514655
Target:  5'- --uCGAUCUGCucagcccacGCCUCGa-CGGUGGCg -3'
miRNA:   3'- cuuGCUAGGCG---------UGGAGUgcGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 45646 0.69 0.439892
Target:  5'- gGAACaccacCCGCACCUCAauCGUcuugacgaaugcgagGGCGGCg -3'
miRNA:   3'- -CUUGcua--GGCGUGGAGU--GCG---------------CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 43629 0.68 0.47458
Target:  5'- cAGCGuucccggCCGC-CCUggucgaACGUGGCGGCg -3'
miRNA:   3'- cUUGCua-----GGCGuGGAg-----UGCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 42666 0.67 0.545589
Target:  5'- cGACGA-CgGCGCCUCcuacacggAUGCcGCGGCg -3'
miRNA:   3'- cUUGCUaGgCGUGGAG--------UGCGcCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 42533 0.67 0.524892
Target:  5'- --uCGcgCCcCGCCUCAUGCGacaccccugaGCGGCg -3'
miRNA:   3'- cuuGCuaGGcGUGGAGUGCGC----------CGCCG- -5'
18073 3' -58.1 NC_004680.1 + 42177 0.69 0.417586
Target:  5'- -cAUGcgCCcCACCUCuGCGCccGGCGGCa -3'
miRNA:   3'- cuUGCuaGGcGUGGAG-UGCG--CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 42028 0.73 0.248148
Target:  5'- ---aGAUCUGCACg-CAgUGCGGCGGCg -3'
miRNA:   3'- cuugCUAGGCGUGgaGU-GCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 41685 0.75 0.177555
Target:  5'- -cGCGAUCUGCACC-CACaaGGaCGGCg -3'
miRNA:   3'- cuUGCUAGGCGUGGaGUGcgCC-GCCG- -5'
18073 3' -58.1 NC_004680.1 + 41308 0.67 0.514655
Target:  5'- uGGACGAUgCCGCugCUgAuCGCcGcCGGCa -3'
miRNA:   3'- -CUUGCUA-GGCGugGAgU-GCGcC-GCCG- -5'
18073 3' -58.1 NC_004680.1 + 41170 0.66 0.598327
Target:  5'- -cACGcgCCGCGCCUUugccuuguCGUccaGCGGCa -3'
miRNA:   3'- cuUGCuaGGCGUGGAGu-------GCGc--CGCCG- -5'
18073 3' -58.1 NC_004680.1 + 39512 0.69 0.426797
Target:  5'- uAGCGAUCCGUgagaucGCCgauuugCAuCGCcgGGCGGCu -3'
miRNA:   3'- cUUGCUAGGCG------UGGa-----GU-GCG--CCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 39021 0.66 0.608987
Target:  5'- --cCGAagCGCGCUaCACGUGGCcGCa -3'
miRNA:   3'- cuuGCUagGCGUGGaGUGCGCCGcCG- -5'
18073 3' -58.1 NC_004680.1 + 38581 0.66 0.598327
Target:  5'- uGGugGAUCCGUGgCUgGCccgguuggaGCGGCaGGCc -3'
miRNA:   3'- -CUugCUAGGCGUgGAgUG---------CGCCG-CCG- -5'
18073 3' -58.1 NC_004680.1 + 38451 0.66 0.577096
Target:  5'- ---gGAUCgGCuccaacGCCUCACGgGcaGCGGCg -3'
miRNA:   3'- cuugCUAGgCG------UGGAGUGCgC--CGCCG- -5'
18073 3' -58.1 NC_004680.1 + 35159 0.66 0.577096
Target:  5'- --cUGGUCuugaCGCGCUUCGCGCGGUGu- -3'
miRNA:   3'- cuuGCUAG----GCGUGGAGUGCGCCGCcg -5'
18073 3' -58.1 NC_004680.1 + 34558 0.72 0.295004
Target:  5'- uGGGCGAUCgucaGCAUCgccgacuacCGCGGCGGCg -3'
miRNA:   3'- -CUUGCUAGg---CGUGGagu------GCGCCGCCG- -5'
18073 3' -58.1 NC_004680.1 + 34130 0.66 0.619666
Target:  5'- aGGugGugugCCGCGagUUGUGCGGCGGCa -3'
miRNA:   3'- -CUugCua--GGCGUggAGUGCGCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.