miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18104 3' -58.3 NC_004680.1 + 30569 0.66 0.615493
Target:  5'- cCACG-UACCGCCGCGGGaucacCACCGUuucaccaccgcacGGUu -3'
miRNA:   3'- -GUGCgGUGGUGGCGCUU-----GUGGCA-------------CCG- -5'
18104 3' -58.3 NC_004680.1 + 10878 0.66 0.615493
Target:  5'- uGCGCCcuucucaGCCGauGCGGgaaGCGUCGUGGCg -3'
miRNA:   3'- gUGCGG-------UGGUggCGCU---UGUGGCACCG- -5'
18104 3' -58.3 NC_004680.1 + 42673 0.66 0.605914
Target:  5'- gGCGCCucCUACa-CGGAUGCCGcGGCg -3'
miRNA:   3'- gUGCGGu-GGUGgcGCUUGUGGCaCCG- -5'
18104 3' -58.3 NC_004680.1 + 7784 0.66 0.605914
Target:  5'- uCGCGgCACCACgGUugucgcggauGAACACCGccugcaGGCc -3'
miRNA:   3'- -GUGCgGUGGUGgCG----------CUUGUGGCa-----CCG- -5'
18104 3' -58.3 NC_004680.1 + 23206 0.66 0.605914
Target:  5'- gACGUCugCucCCGCGcAUAuccaccacCCGUGGCu -3'
miRNA:   3'- gUGCGGugGu-GGCGCuUGU--------GGCACCG- -5'
18104 3' -58.3 NC_004680.1 + 9878 0.66 0.605914
Target:  5'- -cCGCUuucacgGCCGCCGCGAcagGCAUCaucGGCg -3'
miRNA:   3'- guGCGG------UGGUGGCGCU---UGUGGca-CCG- -5'
18104 3' -58.3 NC_004680.1 + 30527 0.66 0.59529
Target:  5'- aCACGaugCGCCGCUGCaccAACugCGgGGCg -3'
miRNA:   3'- -GUGCg--GUGGUGGCGc--UUGugGCaCCG- -5'
18104 3' -58.3 NC_004680.1 + 21441 0.66 0.59529
Target:  5'- gGCGCCGCCAUaCGUG---GCCGacggGGCu -3'
miRNA:   3'- gUGCGGUGGUG-GCGCuugUGGCa---CCG- -5'
18104 3' -58.3 NC_004680.1 + 24870 0.66 0.59529
Target:  5'- gGCGCCcCCGgaGUGGauaACACUaGUGGCg -3'
miRNA:   3'- gUGCGGuGGUggCGCU---UGUGG-CACCG- -5'
18104 3' -58.3 NC_004680.1 + 30091 0.66 0.59529
Target:  5'- --gGCCACUACaucgacgaaGCuGACguGCCGUGGCu -3'
miRNA:   3'- gugCGGUGGUGg--------CGcUUG--UGGCACCG- -5'
18104 3' -58.3 NC_004680.1 + 28659 0.66 0.59529
Target:  5'- cUACGCaCACCAagGCGAcuuguacgccuGCACCGaacccGGCg -3'
miRNA:   3'- -GUGCG-GUGGUggCGCU-----------UGUGGCa----CCG- -5'
18104 3' -58.3 NC_004680.1 + 58554 0.66 0.594229
Target:  5'- aCGCGUCGCauggaaaCACgGCGGACGCgacaCGUGGg -3'
miRNA:   3'- -GUGCGGUG-------GUGgCGCUUGUG----GCACCg -5'
18104 3' -58.3 NC_004680.1 + 9302 0.66 0.584696
Target:  5'- gCACG-CGCCACCGCGc-CAUUGaccGGCg -3'
miRNA:   3'- -GUGCgGUGGUGGCGCuuGUGGCa--CCG- -5'
18104 3' -58.3 NC_004680.1 + 53799 0.66 0.584696
Target:  5'- aACGCCACCcacaccuacaGgCGCGAcaACGCC--GGCg -3'
miRNA:   3'- gUGCGGUGG----------UgGCGCU--UGUGGcaCCG- -5'
18104 3' -58.3 NC_004680.1 + 19603 0.66 0.584696
Target:  5'- -gUGUUACCACCgGCG-GCGCCGUcacccgGGCc -3'
miRNA:   3'- guGCGGUGGUGG-CGCuUGUGGCA------CCG- -5'
18104 3' -58.3 NC_004680.1 + 12440 0.66 0.584696
Target:  5'- uGC-CCACCACCgGUGGugGCgGcGGCc -3'
miRNA:   3'- gUGcGGUGGUGG-CGCUugUGgCaCCG- -5'
18104 3' -58.3 NC_004680.1 + 15052 0.66 0.584696
Target:  5'- -uCGCCACCaACCGCGccCAUCGgcuGCc -3'
miRNA:   3'- guGCGGUGG-UGGCGCuuGUGGCac-CG- -5'
18104 3' -58.3 NC_004680.1 + 57356 0.66 0.583638
Target:  5'- aCGCGUCACCGaacacuggaacacCUGCGGACAacaaguccucgUCGUGGa -3'
miRNA:   3'- -GUGCGGUGGU-------------GGCGCUUGU-----------GGCACCg -5'
18104 3' -58.3 NC_004680.1 + 29834 0.66 0.583638
Target:  5'- gAUGCCGCCACgcuUGCGAguucauuucuggcAUACCGUGu- -3'
miRNA:   3'- gUGCGGUGGUG---GCGCU-------------UGUGGCACcg -5'
18104 3' -58.3 NC_004680.1 + 21210 0.66 0.574138
Target:  5'- aCugGCCgguGCCGCCG-GAGC-CgGUGGa -3'
miRNA:   3'- -GugCGG---UGGUGGCgCUUGuGgCACCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.