miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18128 3' -46.1 NC_004680.1 + 23117 0.66 0.997476
Target:  5'- ---aAGAGCGGCGAUaGCAUCaGAugcuGCCu -3'
miRNA:   3'- uaucUCUUGUUGCUG-CGUAG-CUu---UGG- -5'
18128 3' -46.1 NC_004680.1 + 28376 0.66 0.997476
Target:  5'- -aAGcuAACcgguGGCGugaACGCAUCGAAACCc -3'
miRNA:   3'- uaUCucUUG----UUGC---UGCGUAGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 24744 0.66 0.996957
Target:  5'- gGUGGuGGugGugGugGCAcauccaccUCGGGAUCu -3'
miRNA:   3'- -UAUCuCUugUugCugCGU--------AGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 50059 0.66 0.996606
Target:  5'- --cGAGGgcucugucgaucucgGCGGCGACGUGggccUCGAAAUCg -3'
miRNA:   3'- uauCUCU---------------UGUUGCUGCGU----AGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 985 0.66 0.996353
Target:  5'- -aGGAGAACGAaccgGACGCcccacCGGAuuGCCg -3'
miRNA:   3'- uaUCUCUUGUUg---CUGCGua---GCUU--UGG- -5'
18128 3' -46.1 NC_004680.1 + 38867 0.66 0.995654
Target:  5'- uUGGAGggUccCGGCGCGgggggCGGgggAACCa -3'
miRNA:   3'- uAUCUCuuGuuGCUGCGUa----GCU---UUGG- -5'
18128 3' -46.1 NC_004680.1 + 35995 0.66 0.995654
Target:  5'- --cGGGGACuaucACGAcCGCAUaccggcCGAGGCCa -3'
miRNA:   3'- uauCUCUUGu---UGCU-GCGUA------GCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 37994 0.66 0.995654
Target:  5'- --cGAGAAUuuGGCGAC-CGUUGAcACCg -3'
miRNA:   3'- uauCUCUUG--UUGCUGcGUAGCUuUGG- -5'
18128 3' -46.1 NC_004680.1 + 53525 0.66 0.995654
Target:  5'- gGUGGGGGAU--CGAa--GUCGAAACCa -3'
miRNA:   3'- -UAUCUCUUGuuGCUgcgUAGCUUUGG- -5'
18128 3' -46.1 NC_004680.1 + 1223 0.66 0.995578
Target:  5'- gAUGGAGGAucCGugGACGUuguacacGUCGAcggcugggcAGCCg -3'
miRNA:   3'- -UAUCUCUU--GUugCUGCG-------UAGCU---------UUGG- -5'
18128 3' -46.1 NC_004680.1 + 14783 0.67 0.994848
Target:  5'- ----cGggUAGCGGCGCAaCGGAGuCCc -3'
miRNA:   3'- uaucuCuuGUUGCUGCGUaGCUUU-GG- -5'
18128 3' -46.1 NC_004680.1 + 53639 0.67 0.994848
Target:  5'- cUGGAGGAguACGAgGgCGUCGGu-CCa -3'
miRNA:   3'- uAUCUCUUguUGCUgC-GUAGCUuuGG- -5'
18128 3' -46.1 NC_004680.1 + 37334 0.67 0.994848
Target:  5'- cUAGGGAACuACGACGgAacCGAccuGGCCu -3'
miRNA:   3'- uAUCUCUUGuUGCUGCgUa-GCU---UUGG- -5'
18128 3' -46.1 NC_004680.1 + 58264 0.67 0.994848
Target:  5'- --cGAGAACGgccccGCGAauaccaacaaCGCAUCGccaAAGCCg -3'
miRNA:   3'- uauCUCUUGU-----UGCU----------GCGUAGC---UUUGG- -5'
18128 3' -46.1 NC_004680.1 + 39860 0.67 0.994848
Target:  5'- -cAGGGAGCGccgcagagaGCGcCGCAUgGAGcGCCg -3'
miRNA:   3'- uaUCUCUUGU---------UGCuGCGUAgCUU-UGG- -5'
18128 3' -46.1 NC_004680.1 + 39776 0.67 0.994848
Target:  5'- -cAGGGAGCGccgcauggaGCGcCGCAUgGAGcGCCg -3'
miRNA:   3'- uaUCUCUUGU---------UGCuGCGUAgCUU-UGG- -5'
18128 3' -46.1 NC_004680.1 + 39692 0.67 0.994848
Target:  5'- -cAGGGAGCGccgcauggaGCGcCGCAUgGAGcGCCg -3'
miRNA:   3'- uaUCUCUUGU---------UGCuGCGUAgCUU-UGG- -5'
18128 3' -46.1 NC_004680.1 + 39656 0.67 0.994848
Target:  5'- -cAGGGAGCGccgcagggaGCGcCGCAUgGAGcGCCg -3'
miRNA:   3'- uaUCUCUUGU---------UGCuGCGUAgCUU-UGG- -5'
18128 3' -46.1 NC_004680.1 + 39596 0.67 0.994848
Target:  5'- -cAGGGAGCGccgcauggaGCGcCGCAUgGAGcGCCg -3'
miRNA:   3'- uaUCUCUUGU---------UGCuGCGUAgCUU-UGG- -5'
18128 3' -46.1 NC_004680.1 + 45694 0.67 0.993926
Target:  5'- -gAGGGAACGGCGAagcguucgGCAagGGAGCg -3'
miRNA:   3'- uaUCUCUUGUUGCUg-------CGUagCUUUGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.