miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18188 3' -64.8 NC_004680.1 + 57110 0.66 0.309608
Target:  5'- aCCUGCaGCCACAccuacGUCCCGGCu--GCa -3'
miRNA:   3'- cGGACG-CGGUGUc----CGGGGCCGccuCG- -5'
18188 3' -64.8 NC_004680.1 + 47840 0.66 0.302511
Target:  5'- ---aGCGCCgGCuGGCUgCGGCGGuuGGCc -3'
miRNA:   3'- cggaCGCGG-UGuCCGGgGCCGCC--UCG- -5'
18188 3' -64.8 NC_004680.1 + 21617 0.66 0.302511
Target:  5'- --gUGaCGCUGCAGGCguuCUCGGCcGGGGCc -3'
miRNA:   3'- cggAC-GCGGUGUCCG---GGGCCG-CCUCG- -5'
18188 3' -64.8 NC_004680.1 + 21445 0.66 0.29554
Target:  5'- cGCCgGCGCCGCcauacguGGCCgaCGGgGcuGAGCc -3'
miRNA:   3'- -CGGaCGCGGUGu------CCGGg-GCCgC--CUCG- -5'
18188 3' -64.8 NC_004680.1 + 21355 0.66 0.29554
Target:  5'- aGCCccGUcgGCCACGuauggcGGCgCCGGCGGuGUa -3'
miRNA:   3'- -CGGa-CG--CGGUGU------CCGgGGCCGCCuCG- -5'
18188 3' -64.8 NC_004680.1 + 42720 0.66 0.288694
Target:  5'- cGCgUUGCGCCGCAaguuCCCCGGuCGuGGCu -3'
miRNA:   3'- -CG-GACGCGGUGUcc--GGGGCC-GCcUCG- -5'
18188 3' -64.8 NC_004680.1 + 11890 0.66 0.281974
Target:  5'- uGCCcggGgGUUGCAGacggcGCCCCGGgGaGAGCg -3'
miRNA:   3'- -CGGa--CgCGGUGUC-----CGGGGCCgC-CUCG- -5'
18188 3' -64.8 NC_004680.1 + 19778 0.66 0.281974
Target:  5'- uCCgGCGgCAaugguGGCCCUGGUGGuGGCu -3'
miRNA:   3'- cGGaCGCgGUgu---CCGGGGCCGCC-UCG- -5'
18188 3' -64.8 NC_004680.1 + 39855 0.66 0.281974
Target:  5'- cGCCgcagggaGCGCCGCAGagaGCgCCGcaUGGAGCg -3'
miRNA:   3'- -CGGa------CGCGGUGUC---CGgGGCc-GCCUCG- -5'
18188 3' -64.8 NC_004680.1 + 19243 0.66 0.281974
Target:  5'- cGCC-GUGgaUACAGGUUCCGGCGGuGa -3'
miRNA:   3'- -CGGaCGCg-GUGUCCGGGGCCGCCuCg -5'
18188 3' -64.8 NC_004680.1 + 39651 0.66 0.281974
Target:  5'- cGCCgcagggaGCGCCGCAGggaGCgCCGcaUGGAGCg -3'
miRNA:   3'- -CGGa------CGCGGUGUC---CGgGGCc-GCCUCG- -5'
18188 3' -64.8 NC_004680.1 + 39723 0.66 0.281974
Target:  5'- cGCCgcagagaGCGCCGCAGggaGCgCCGcaUGGAGCg -3'
miRNA:   3'- -CGGa------CGCGGUGUC---CGgGGCc-GCCUCG- -5'
18188 3' -64.8 NC_004680.1 + 39759 0.66 0.281974
Target:  5'- cGCCgcauggaGCGCCGCAGggaGCgCCGcaUGGAGCg -3'
miRNA:   3'- -CGGa------CGCGGUGUC---CGgGGCc-GCCUCG- -5'
18188 3' -64.8 NC_004680.1 + 5971 0.66 0.275378
Target:  5'- ---aGCGCCGCAGcaacGUCaUCGGCGGuAGCa -3'
miRNA:   3'- cggaCGCGGUGUC----CGG-GGCCGCC-UCG- -5'
18188 3' -64.8 NC_004680.1 + 33415 0.66 0.268906
Target:  5'- aGCUcggcgGUGCgGgAGGCCCCGaucuCGGAGUg -3'
miRNA:   3'- -CGGa----CGCGgUgUCCGGGGCc---GCCUCG- -5'
18188 3' -64.8 NC_004680.1 + 11167 0.66 0.268906
Target:  5'- cGCCgggGcCGCCACcaAGGCcgCCCGGCagcaGGAuGCc -3'
miRNA:   3'- -CGGa--C-GCGGUG--UCCG--GGGCCG----CCU-CG- -5'
18188 3' -64.8 NC_004680.1 + 21213 0.67 0.256331
Target:  5'- gGCCgGUGCCGCcGGagCCGGUGGAu- -3'
miRNA:   3'- -CGGaCGCGGUGuCCggGGCCGCCUcg -5'
18188 3' -64.8 NC_004680.1 + 38891 0.67 0.255715
Target:  5'- uGCUUGUgcaguucgucccaGCCGuuggaGGGUCCCGGCgcggGGGGCg -3'
miRNA:   3'- -CGGACG-------------CGGUg----UCCGGGGCCG----CCUCG- -5'
18188 3' -64.8 NC_004680.1 + 21564 0.67 0.244242
Target:  5'- aGCCcGgGCCGguGGCCUCaucuGGC-GAGCa -3'
miRNA:   3'- -CGGaCgCGGUguCCGGGG----CCGcCUCG- -5'
18188 3' -64.8 NC_004680.1 + 19705 0.67 0.238377
Target:  5'- gGUCauggGCgGCCACGGuacGCCaCCuGGUGGAGCg -3'
miRNA:   3'- -CGGa---CG-CGGUGUC---CGG-GG-CCGCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.