miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18227 5' -54.5 NC_004680.1 + 49690 0.66 0.805007
Target:  5'- ----gCGCGCUUGG--GCGACGAacucGGCa -3'
miRNA:   3'- cagugGCGCGAACUgaUGCUGCU----CCG- -5'
18227 5' -54.5 NC_004680.1 + 8194 0.66 0.799274
Target:  5'- uUUACCGCGCUgaggGuuacccggcggugaaGCUggACGACcAGGCg -3'
miRNA:   3'- cAGUGGCGCGAa---C---------------UGA--UGCUGcUCCG- -5'
18227 5' -54.5 NC_004680.1 + 26948 0.66 0.795417
Target:  5'- cGUCACUGCGg--GAgU-CGugGGGGUa -3'
miRNA:   3'- -CAGUGGCGCgaaCUgAuGCugCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 21446 0.66 0.795417
Target:  5'- -cCGCCgGCGCcgccauacgUGGC--CGACGGGGCu -3'
miRNA:   3'- caGUGG-CGCGa--------ACUGauGCUGCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 23075 0.66 0.785657
Target:  5'- uUCACacugGCGCcgcUGGC-ACGAcCGGGGCg -3'
miRNA:   3'- cAGUGg---CGCGa--ACUGaUGCU-GCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 9659 0.66 0.785657
Target:  5'- aGUUGUCGCGUgaggUUGAUcgUGCGACGaAGGCu -3'
miRNA:   3'- -CAGUGGCGCG----AACUG--AUGCUGC-UCCG- -5'
18227 5' -54.5 NC_004680.1 + 49227 0.66 0.775739
Target:  5'- cGUUGCUGCGgUugUGGCUACaGAgGAGGa -3'
miRNA:   3'- -CAGUGGCGCgA--ACUGAUG-CUgCUCCg -5'
18227 5' -54.5 NC_004680.1 + 56060 0.66 0.765673
Target:  5'- -aCGCCGacuGCccaGACUGCGGCGAauGGUa -3'
miRNA:   3'- caGUGGCg--CGaa-CUGAUGCUGCU--CCG- -5'
18227 5' -54.5 NC_004680.1 + 49795 0.66 0.765673
Target:  5'- cUCGCUGCGCUgGAUacCGGgGAGGa -3'
miRNA:   3'- cAGUGGCGCGAaCUGauGCUgCUCCg -5'
18227 5' -54.5 NC_004680.1 + 40659 0.66 0.755472
Target:  5'- cGUCGUgGCGUggGGCUcugcgcACGuCGAGGCg -3'
miRNA:   3'- -CAGUGgCGCGaaCUGA------UGCuGCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 27874 0.66 0.755472
Target:  5'- --aGCCGCGCUgcUGACgcaaggucuccACGGCGAGuucGCg -3'
miRNA:   3'- cagUGGCGCGA--ACUGa----------UGCUGCUC---CG- -5'
18227 5' -54.5 NC_004680.1 + 41432 0.66 0.755472
Target:  5'- uUCAgCGUGU---GgUGCGGCGAGGCc -3'
miRNA:   3'- cAGUgGCGCGaacUgAUGCUGCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 40491 0.66 0.755472
Target:  5'- cGUCGUgGCGUggGGCUcugcgcACGuCGAGGCg -3'
miRNA:   3'- -CAGUGgCGCGaaCUGA------UGCuGCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 51514 0.67 0.734704
Target:  5'- aGUCuCCcCGCcacugGugUAgGACGAGGCu -3'
miRNA:   3'- -CAGuGGcGCGaa---CugAUgCUGCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 21865 0.67 0.734704
Target:  5'- uUCACCGCcauGCcagcccacuuaUUcGGCcGCGACGAGGUg -3'
miRNA:   3'- cAGUGGCG---CG-----------AA-CUGaUGCUGCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 38943 0.67 0.734704
Target:  5'- -aCACCGCcacuGCggagGaACUcgccGCGAUGAGGCa -3'
miRNA:   3'- caGUGGCG----CGaa--C-UGA----UGCUGCUCCG- -5'
18227 5' -54.5 NC_004680.1 + 33970 0.67 0.734704
Target:  5'- aUC-CC-CGUUcgGACUACGACGuguGGCg -3'
miRNA:   3'- cAGuGGcGCGAa-CUGAUGCUGCu--CCG- -5'
18227 5' -54.5 NC_004680.1 + 4020 0.67 0.734704
Target:  5'- -cCGCCGCGuCUUGACcgGCaACGAGaacuGCg -3'
miRNA:   3'- caGUGGCGC-GAACUGa-UGcUGCUC----CG- -5'
18227 5' -54.5 NC_004680.1 + 19272 0.67 0.724162
Target:  5'- gGUCACCGaCGcCUUcACaauCGACGAcGGCg -3'
miRNA:   3'- -CAGUGGC-GC-GAAcUGau-GCUGCU-CCG- -5'
18227 5' -54.5 NC_004680.1 + 21636 0.67 0.713528
Target:  5'- cGUUGCCGUGCgcGA--ACGugGGGGUu -3'
miRNA:   3'- -CAGUGGCGCGaaCUgaUGCugCUCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.