miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18232 5' -50 NC_004680.1 + 12569 0.66 0.946308
Target:  5'- gGAUCGGC-AUGGaCGGCGGCGGuGCGCu -3'
miRNA:   3'- -CUGGUCGuUACUcGCUGUUGCU-UGUG- -5'
18232 5' -50 NC_004680.1 + 14519 0.66 0.946308
Target:  5'- -uUCAGCuccUGcGGCGACGGCG-GCACa -3'
miRNA:   3'- cuGGUCGuu-AC-UCGCUGUUGCuUGUG- -5'
18232 5' -50 NC_004680.1 + 51616 0.66 0.94126
Target:  5'- cAUCAGCGAcaUGGGCGGCGugcgccuugGCGAucCGCu -3'
miRNA:   3'- cUGGUCGUU--ACUCGCUGU---------UGCUu-GUG- -5'
18232 5' -50 NC_004680.1 + 5403 0.66 0.94126
Target:  5'- -uCCAGCGAaccAGCGACc-UGAACACg -3'
miRNA:   3'- cuGGUCGUUac-UCGCUGuuGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 32497 0.66 0.94126
Target:  5'- --aCGGCAAccUGcgcgcccgcAGCGACGACGGccGCACg -3'
miRNA:   3'- cugGUCGUU--AC---------UCGCUGUUGCU--UGUG- -5'
18232 5' -50 NC_004680.1 + 24905 0.66 0.939687
Target:  5'- cGCCGGCGGUG-GUGGCggUuccgguucagaucaGAGCACc -3'
miRNA:   3'- cUGGUCGUUACuCGCUGuuG--------------CUUGUG- -5'
18232 5' -50 NC_004680.1 + 36751 0.66 0.935914
Target:  5'- cAUCcGUggUGAGCG-CAGCG-ACACg -3'
miRNA:   3'- cUGGuCGuuACUCGCuGUUGCuUGUG- -5'
18232 5' -50 NC_004680.1 + 14181 0.66 0.932563
Target:  5'- cACCAGCcccGGUGcggaagauauccgccGGCGACAacGCGAACGu -3'
miRNA:   3'- cUGGUCG---UUAC---------------UCGCUGU--UGCUUGUg -5'
18232 5' -50 NC_004680.1 + 38425 0.66 0.930268
Target:  5'- --gCGGCGA-GAGgGACAgaGCGAACAa -3'
miRNA:   3'- cugGUCGUUaCUCgCUGU--UGCUUGUg -5'
18232 5' -50 NC_004680.1 + 15836 0.67 0.918075
Target:  5'- cGCCcGCGGUGGGUGugGAuuuUGAGCAg -3'
miRNA:   3'- cUGGuCGUUACUCGCugUU---GCUUGUg -5'
18232 5' -50 NC_004680.1 + 34676 0.67 0.918075
Target:  5'- cGugCGGagaCGAUGccuaCGACGGCGAGCACa -3'
miRNA:   3'- -CugGUC---GUUACuc--GCUGUUGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 40879 0.67 0.918075
Target:  5'- aAUCAGCAGUGGaccaccgcccGCGGCGugGAcuacuCACa -3'
miRNA:   3'- cUGGUCGUUACU----------CGCUGUugCUu----GUG- -5'
18232 5' -50 NC_004680.1 + 25713 0.67 0.911528
Target:  5'- gGugCGGCGuc-GGCGACGGCGGGgAUg -3'
miRNA:   3'- -CugGUCGUuacUCGCUGUUGCUUgUG- -5'
18232 5' -50 NC_004680.1 + 55440 0.67 0.911528
Target:  5'- uGGCCGGCGAguuccgGGGgGACAcUGAugguGCGCa -3'
miRNA:   3'- -CUGGUCGUUa-----CUCgCUGUuGCU----UGUG- -5'
18232 5' -50 NC_004680.1 + 12965 0.67 0.911528
Target:  5'- gGACCuGGCcuUGGGCGGCGGCuuGCGg -3'
miRNA:   3'- -CUGG-UCGuuACUCGCUGUUGcuUGUg -5'
18232 5' -50 NC_004680.1 + 52394 0.67 0.911528
Target:  5'- aACCAuGCcucGAUGAGCGugu-CGAACGCg -3'
miRNA:   3'- cUGGU-CG---UUACUCGCuguuGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 37443 0.67 0.904683
Target:  5'- uGACCAucauccgcaacGCGAUGAGgGAgAcGCGAugACg -3'
miRNA:   3'- -CUGGU-----------CGUUACUCgCUgU-UGCUugUG- -5'
18232 5' -50 NC_004680.1 + 42073 0.67 0.897544
Target:  5'- aGACCuGCucgAAUGAGUGcCGcCGGGCGCa -3'
miRNA:   3'- -CUGGuCG---UUACUCGCuGUuGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 46104 0.68 0.882399
Target:  5'- -uUCGGCGGUGAcgggGCGGCcuuggguGCGGGCGCa -3'
miRNA:   3'- cuGGUCGUUACU----CGCUGu------UGCUUGUG- -5'
18232 5' -50 NC_004680.1 + 36606 0.68 0.882399
Target:  5'- cGACgAGCuugcGAGCGGuguCGGCGAACAUc -3'
miRNA:   3'- -CUGgUCGuua-CUCGCU---GUUGCUUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.