miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18238 5' -54.8 NC_004680.1 + 25310 0.66 0.775739
Target:  5'- gUGAUgCCgUGGACaGuCAUCGccucguagacgaGGGCCGCCa -3'
miRNA:   3'- -ACUA-GG-ACCUGgC-GUAGC------------UUCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 8220 0.66 0.765673
Target:  5'- gUGAagCUGGACgaccagGCGUCGAAGCagcguuCCa -3'
miRNA:   3'- -ACUagGACCUGg-----CGUAGCUUCGgu----GG- -5'
18238 5' -54.8 NC_004680.1 + 20591 0.66 0.755472
Target:  5'- gUGAUCCa-GAgCGCGUUGAuacCCGCCg -3'
miRNA:   3'- -ACUAGGacCUgGCGUAGCUuc-GGUGG- -5'
18238 5' -54.8 NC_004680.1 + 53104 0.66 0.745145
Target:  5'- gGAUcgCCgcgugGGACaGCcUCGAuaaAGCCACCa -3'
miRNA:   3'- aCUA--GGa----CCUGgCGuAGCU---UCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 33128 0.66 0.734704
Target:  5'- ------aGGGCCGCAUC---GCCACCa -3'
miRNA:   3'- acuaggaCCUGGCGUAGcuuCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 34025 0.66 0.734704
Target:  5'- cGGUCCa--ACCGaGUCGuuGCCGCCg -3'
miRNA:   3'- aCUAGGaccUGGCgUAGCuuCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 437 0.67 0.724162
Target:  5'- ----aCUGGaAUgGCAgaUUGAGGCCACCg -3'
miRNA:   3'- acuagGACC-UGgCGU--AGCUUCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 25212 0.67 0.723103
Target:  5'- uUGG-CCUGGcACCGCcaccaccaccuccGUauAGGCCACCg -3'
miRNA:   3'- -ACUaGGACC-UGGCG-------------UAgcUUCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 37839 0.67 0.717792
Target:  5'- gGAgCUgugGGGCCGCAcuccguguguggagaUCGAaguGGUCACCg -3'
miRNA:   3'- aCUaGGa--CCUGGCGU---------------AGCU---UCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 10977 0.67 0.713528
Target:  5'- cGuUCCgGGACUGguUCGGcAGCgACCc -3'
miRNA:   3'- aCuAGGaCCUGGCguAGCU-UCGgUGG- -5'
18238 5' -54.8 NC_004680.1 + 20743 0.67 0.702815
Target:  5'- -cGUCUUGG-CCGCcgAUCGGGccuguuccGCCGCCa -3'
miRNA:   3'- acUAGGACCuGGCG--UAGCUU--------CGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 10903 0.67 0.692034
Target:  5'- cGAUUCaGGACCaGCccgacggCGAGGaCCGCCu -3'
miRNA:   3'- aCUAGGaCCUGG-CGua-----GCUUC-GGUGG- -5'
18238 5' -54.8 NC_004680.1 + 10010 0.67 0.692034
Target:  5'- cGGUC--GGGCCgGCAUCGAcGUCGCUg -3'
miRNA:   3'- aCUAGgaCCUGG-CGUAGCUuCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 43723 0.67 0.681195
Target:  5'- aGuUCCUGGACCGCGaagcgcUGGAGUUgaACCu -3'
miRNA:   3'- aCuAGGACCUGGCGUa-----GCUUCGG--UGG- -5'
18238 5' -54.8 NC_004680.1 + 11169 0.68 0.670309
Target:  5'- gGcgCCgGGGCCGCcacCaAGGCCGCCc -3'
miRNA:   3'- aCuaGGaCCUGGCGua-GcUUCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 26478 0.68 0.659389
Target:  5'- gGAUCgCU-GACCGCAUCGccgacAGGaUCACCg -3'
miRNA:   3'- aCUAG-GAcCUGGCGUAGC-----UUC-GGUGG- -5'
18238 5' -54.8 NC_004680.1 + 37916 0.68 0.648443
Target:  5'- gUGcgCCUGGACUGuCGcCGAacuGGUCACUg -3'
miRNA:   3'- -ACuaGGACCUGGC-GUaGCU---UCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 11262 0.68 0.648443
Target:  5'- gGAuUCCUGGcauGCCGCAg-GAcGCUGCCg -3'
miRNA:   3'- aCU-AGGACC---UGGCGUagCUuCGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 2117 0.68 0.637482
Target:  5'- aGAggCUGGcCCGUAUCGu--CCACCa -3'
miRNA:   3'- aCUagGACCuGGCGUAGCuucGGUGG- -5'
18238 5' -54.8 NC_004680.1 + 27360 0.68 0.637482
Target:  5'- aGGUUCUcGGCggcaGCGUCGccGCCGCCg -3'
miRNA:   3'- aCUAGGAcCUGg---CGUAGCuuCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.