miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18239 3' -57.1 NC_004680.1 + 35097 0.66 0.662792
Target:  5'- --uCGCCGGcCCGAgGUUgGCUCGGCUg -3'
miRNA:   3'- gauGCGGCUaGGUUgCGA-CGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 56051 0.66 0.662792
Target:  5'- aCUGCGgCGAcgCCGAC--UGCCCAGaCUg -3'
miRNA:   3'- -GAUGCgGCUa-GGUUGcgACGGGUC-GG- -5'
18239 3' -57.1 NC_004680.1 + 15867 0.66 0.662792
Target:  5'- gUACGCCuauUUCGugGC-GCCUgAGCCg -3'
miRNA:   3'- gAUGCGGcu-AGGUugCGaCGGG-UCGG- -5'
18239 3' -57.1 NC_004680.1 + 58213 0.66 0.662792
Target:  5'- -cACGCCGcaCUAACaGCggcaCCCAGCCc -3'
miRNA:   3'- gaUGCGGCuaGGUUG-CGac--GGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 50116 0.66 0.651999
Target:  5'- -aGCGCg---CCAAgGCUGCgCUGGCCg -3'
miRNA:   3'- gaUGCGgcuaGGUUgCGACG-GGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 36575 0.66 0.651999
Target:  5'- gCUGCGgCGAUCgAACGggacGCCCcGCUg -3'
miRNA:   3'- -GAUGCgGCUAGgUUGCga--CGGGuCGG- -5'
18239 3' -57.1 NC_004680.1 + 5666 0.66 0.651999
Target:  5'- --uCGCCGGaagugUCC-GCGCUGgUCAGCUu -3'
miRNA:   3'- gauGCGGCU-----AGGuUGCGACgGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 51719 0.66 0.650919
Target:  5'- aCUAgcUGCCGAUCUgcuugcCGCUGCUgcgguugUAGCCg -3'
miRNA:   3'- -GAU--GCGGCUAGGuu----GCGACGG-------GUCGG- -5'
18239 3' -57.1 NC_004680.1 + 48485 0.66 0.641188
Target:  5'- cCUGCaGCaacaCGAUUCGuccggggaagcCGCUGCCCGGUCg -3'
miRNA:   3'- -GAUG-CG----GCUAGGUu----------GCGACGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 18121 0.66 0.641188
Target:  5'- -cGCGCCGAUCCG--GUUGCaggugguGCCg -3'
miRNA:   3'- gaUGCGGCUAGGUugCGACGggu----CGG- -5'
18239 3' -57.1 NC_004680.1 + 8130 0.66 0.641188
Target:  5'- -gACGCgGAUUCGGCGgaGUaCCAGUUg -3'
miRNA:   3'- gaUGCGgCUAGGUUGCgaCG-GGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 21441 0.66 0.619553
Target:  5'- -gGCGCCGccauacguggCCGACGggGCUgAGCCc -3'
miRNA:   3'- gaUGCGGCua--------GGUUGCgaCGGgUCGG- -5'
18239 3' -57.1 NC_004680.1 + 42840 0.66 0.619553
Target:  5'- aCU-CGCC-AUUCAGCGCacugccggcgGuCCCAGCCa -3'
miRNA:   3'- -GAuGCGGcUAGGUUGCGa---------C-GGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 37221 0.66 0.619553
Target:  5'- aCUGCGgUGGUUgAGCGU--UCCAGCCg -3'
miRNA:   3'- -GAUGCgGCUAGgUUGCGacGGGUCGG- -5'
18239 3' -57.1 NC_004680.1 + 35118 0.66 0.613067
Target:  5'- -aGCGuCCGGgcacgUCAACGCcgcaaggacuagacgUGCCCGGCg -3'
miRNA:   3'- gaUGC-GGCUa----GGUUGCG---------------ACGGGUCGg -5'
18239 3' -57.1 NC_004680.1 + 24846 0.66 0.608746
Target:  5'- -gGCGCCGGggacuaCAACGCUGCgggcGCCc -3'
miRNA:   3'- gaUGCGGCUag----GUUGCGACGggu-CGG- -5'
18239 3' -57.1 NC_004680.1 + 14711 0.66 0.608746
Target:  5'- uUGCGCCGcuacCCGAUGUaGCCCcuggaguggcaAGCCc -3'
miRNA:   3'- gAUGCGGCua--GGUUGCGaCGGG-----------UCGG- -5'
18239 3' -57.1 NC_004680.1 + 9214 0.66 0.608746
Target:  5'- -cGCGCCGGUCaauGGCGCggugGCgCguGCUg -3'
miRNA:   3'- gaUGCGGCUAGg--UUGCGa---CG-GguCGG- -5'
18239 3' -57.1 NC_004680.1 + 21413 0.66 0.608746
Target:  5'- -gACGaCGAUCCGGCGaauggggGCCUGGCg -3'
miRNA:   3'- gaUGCgGCUAGGUUGCga-----CGGGUCGg -5'
18239 3' -57.1 NC_004680.1 + 56914 0.66 0.608746
Target:  5'- cCUACGCCGAauUCUAGgGCgGUgCCGGUg -3'
miRNA:   3'- -GAUGCGGCU--AGGUUgCGaCG-GGUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.