miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18245 3' -60.4 NC_004680.1 + 27304 0.66 0.439412
Target:  5'- gGUGGGCuuGCCGCUgcGGgCGCugUu -3'
miRNA:   3'- -UACCCGugCGGUGGuuCCgGUGugGu -5'
18245 3' -60.4 NC_004680.1 + 28496 0.69 0.282071
Target:  5'- uUGGGaauaGCCAgCCAGGGCaGCGCCGu -3'
miRNA:   3'- uACCCgug-CGGU-GGUUCCGgUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 53692 0.7 0.224664
Target:  5'- -gGaGGUACGCCuuuguaGCCGGGuuGCCACACCGa -3'
miRNA:   3'- uaC-CCGUGCGG------UGGUUC--CGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 11163 0.85 0.016954
Target:  5'- -gGGGC-CGCCACCAAGGCCGC-CCGg -3'
miRNA:   3'- uaCCCGuGCGGUGGUUCCGGUGuGGU- -5'
18245 3' -60.4 NC_004680.1 + 31654 0.66 0.402297
Target:  5'- aGUGGuGCACauCUACCAGcguGGCgACACCAg -3'
miRNA:   3'- -UACC-CGUGc-GGUGGUU---CCGgUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 40485 0.67 0.384501
Target:  5'- --cGGCGCGguCCGCUAGGGCCugGUCAa -3'
miRNA:   3'- uacCCGUGC--GGUGGUUCCGGugUGGU- -5'
18245 3' -60.4 NC_004680.1 + 12341 0.67 0.3758
Target:  5'- uUGGGCGggccaguuCGUCACCGAcaccGGaaCCACGCCAc -3'
miRNA:   3'- uACCCGU--------GCGGUGGUU----CC--GGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 28316 0.67 0.3758
Target:  5'- -gGGGC-CGauCCACCAGGGa-ACACCGg -3'
miRNA:   3'- uaCCCGuGC--GGUGGUUCCggUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 25206 0.68 0.33433
Target:  5'- --uGGCAcCGCCACCAccaccuccguauAGGCCACcguccccgGCCGc -3'
miRNA:   3'- uacCCGU-GCGGUGGU------------UCCGGUG--------UGGU- -5'
18245 3' -60.4 NC_004680.1 + 19592 0.69 0.282071
Target:  5'- -gGcGGCGcCGUCACCcGGGCCaccaACACCAc -3'
miRNA:   3'- uaC-CCGU-GCGGUGGuUCCGG----UGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 12919 0.68 0.321787
Target:  5'- cUGGGaagcCugGCCAgCCAGGuucggcaacgcgggaGCCGCACCAg -3'
miRNA:   3'- uACCC----GugCGGU-GGUUC---------------CGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 43748 0.67 0.341542
Target:  5'- -aGGGCacaccgcGCGUCAUCAAgggcGGCUGCGCCGg -3'
miRNA:   3'- uaCCCG-------UGCGGUGGUU----CCGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 11082 0.66 0.411389
Target:  5'- gAUGGGgAgGCCgguAUCAGGGUCGCuGCCGa -3'
miRNA:   3'- -UACCCgUgCGG---UGGUUCCGGUG-UGGU- -5'
18245 3' -60.4 NC_004680.1 + 12547 0.68 0.303637
Target:  5'- uGUGGcGCACcggcaGCCAUC-GGGCCGcCGCCAc -3'
miRNA:   3'- -UACC-CGUG-----CGGUGGuUCCGGU-GUGGU- -5'
18245 3' -60.4 NC_004680.1 + 12268 0.66 0.405918
Target:  5'- -gGGGCGgcuacCGCCACCGucggaacggauaccuGGGCggcaGCGCCGg -3'
miRNA:   3'- uaCCCGU-----GCGGUGGU---------------UCCGg---UGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 59373 0.67 0.349686
Target:  5'- -aGGGCACguuuuggGCCGCCAgcuaacuuucGGGCCGCGu-- -3'
miRNA:   3'- uaCCCGUG-------CGGUGGU----------UCCGGUGUggu -5'
18245 3' -60.4 NC_004680.1 + 17172 0.69 0.282071
Target:  5'- -gGGGC-CGCCaAUCGAacGGCUGCGCCGg -3'
miRNA:   3'- uaCCCGuGCGG-UGGUU--CCGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 750 0.7 0.242612
Target:  5'- cGUGcGGCcUGCCccgacagugaGCCAGGGCCgaACACCAu -3'
miRNA:   3'- -UAC-CCGuGCGG----------UGGUUCCGG--UGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 2468 0.66 0.402297
Target:  5'- uUGGuGCGCGCCucacgcugaaACgAAcGCCACGCCGc -3'
miRNA:   3'- uACC-CGUGCGG----------UGgUUcCGGUGUGGU- -5'
18245 3' -60.4 NC_004680.1 + 42680 0.67 0.384501
Target:  5'- uGUGGGCuuCGCCgcggcugauGCCGu-GCCGCACCc -3'
miRNA:   3'- -UACCCGu-GCGG---------UGGUucCGGUGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.