miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18246 3' -56.8 NC_004680.1 + 59367 0.66 0.628649
Target:  5'- -cCCCAGCAaccccccCCGGgGGGgUCUGCGCg -3'
miRNA:   3'- uuGGGUUGU-------GGCCgCUUgAGGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 59290 0.68 0.543632
Target:  5'- cGACCCAuGCGCCucGGCGcggGACUUgggcgcguggCACGCCu -3'
miRNA:   3'- -UUGGGU-UGUGG--CCGC---UUGAG----------GUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 59097 1.1 0.000655
Target:  5'- cAACCCAACACCGGCGAACUCCACGCCg -3'
miRNA:   3'- -UUGGGUUGUGGCCGCUUGAGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 58316 0.77 0.159651
Target:  5'- cAGCCCAcugGCucaccuGCCGGCGccuACUCCACGCa -3'
miRNA:   3'- -UUGGGU---UG------UGGCCGCu--UGAGGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 58176 0.69 0.442252
Target:  5'- cGAUgCAAUACCGuGCaacaacuuccgaGAccaGCUCCACGCCg -3'
miRNA:   3'- -UUGgGUUGUGGC-CG------------CU---UGAGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 57329 0.68 0.522629
Target:  5'- gGAUCCAcGCcgGCCGGCGAACcugaaaCGCGUCa -3'
miRNA:   3'- -UUGGGU-UG--UGGCCGCUUGag----GUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 54447 0.67 0.586389
Target:  5'- gAACCUGAagcCACCGaCGAGCaCCACGCa -3'
miRNA:   3'- -UUGGGUU---GUGGCcGCUUGaGGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 53907 0.68 0.522629
Target:  5'- cACCCucacguucuCGCCGGCGuug-UCGCGCCu -3'
miRNA:   3'- uUGGGuu-------GUGGCCGCuugaGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 53609 0.67 0.586389
Target:  5'- cAACCCGGCuACaaaGGCGuacCUCCAaccauCGCCc -3'
miRNA:   3'- -UUGGGUUG-UGg--CCGCuu-GAGGU-----GCGG- -5'
18246 3' -56.8 NC_004680.1 + 53430 0.67 0.597191
Target:  5'- uACCCAcacuccACAaCGGCaacauGCUCUACGCCc -3'
miRNA:   3'- uUGGGU------UGUgGCCGcu---UGAGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 53165 0.73 0.275636
Target:  5'- aGACCCugacgAAUAUCgGGCGuucugccAGCUCCACGCCg -3'
miRNA:   3'- -UUGGG-----UUGUGG-CCGC-------UUGAGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 52278 0.67 0.586389
Target:  5'- uGGCUCGucgGCuuGCCGGCGcAGCUCUGCGgCg -3'
miRNA:   3'- -UUGGGU---UG--UGGCCGC-UUGAGGUGCgG- -5'
18246 3' -56.8 NC_004680.1 + 51911 0.67 0.60152
Target:  5'- cAGCgCAGCACCGagagcauuggcuauuGCGAACaCCGCgGCCc -3'
miRNA:   3'- -UUGgGUUGUGGC---------------CGCUUGaGGUG-CGG- -5'
18246 3' -56.8 NC_004680.1 + 50743 0.66 0.673109
Target:  5'- gAGCCCugAACACC-GCGAucguGCUUgGCGCg -3'
miRNA:   3'- -UUGGG--UUGUGGcCGCU----UGAGgUGCGg -5'
18246 3' -56.8 NC_004680.1 + 49860 0.68 0.512244
Target:  5'- cAGCgCCGACAUCGGCGGACguuaaaCCugGa- -3'
miRNA:   3'- -UUG-GGUUGUGGCCGCUUGa-----GGugCgg -5'
18246 3' -56.8 NC_004680.1 + 49123 0.7 0.432693
Target:  5'- aAGCCCGGCACucuaagccgcgaCGGCGAggucgcuaaauGCUCUGCGUg -3'
miRNA:   3'- -UUGGGUUGUG------------GCCGCU-----------UGAGGUGCGg -5'
18246 3' -56.8 NC_004680.1 + 48511 0.68 0.522629
Target:  5'- cGACCUgcacGACACCGcuccaggacacGCGGAUcaUCCGCGCUc -3'
miRNA:   3'- -UUGGG----UUGUGGC-----------CGCUUG--AGGUGCGG- -5'
18246 3' -56.8 NC_004680.1 + 48423 0.74 0.231265
Target:  5'- aAACUCGACAUgcgCGGUGAugUCCGuCGCCc -3'
miRNA:   3'- -UUGGGUUGUG---GCCGCUugAGGU-GCGG- -5'
18246 3' -56.8 NC_004680.1 + 48301 0.73 0.290429
Target:  5'- -uUCCGucGCGCCGGCGAGCcaaccgaaccuUCCACuuGCCg -3'
miRNA:   3'- uuGGGU--UGUGGCCGCUUG-----------AGGUG--CGG- -5'
18246 3' -56.8 NC_004680.1 + 47930 0.81 0.085363
Target:  5'- cGACCCGGCcaaccgccgcagccaGCCGGCGcuccAACUCCGCGUCa -3'
miRNA:   3'- -UUGGGUUG---------------UGGCCGC----UUGAGGUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.