miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 49455 0.66 0.437137
Target:  5'- aGGUGUGcGCCcaguggucagcGCCCgCgGCG-CCGCCg -3'
miRNA:   3'- gCCACGC-CGG-----------CGGGaGgUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 49311 0.66 0.434467
Target:  5'- gCGG-GCGGucugcacaaccucaCCGUCCgCCACGGCggCGCCg -3'
miRNA:   3'- -GCCaCGCC--------------GGCGGGaGGUGCUG--GUGG- -5'
18251 3' -62.8 NC_004681.1 + 48859 0.68 0.330797
Target:  5'- aGGUGUaGCCGCCgUCCugGagguGCUggACCa -3'
miRNA:   3'- gCCACGcCGGCGGgAGGugC----UGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 47460 0.66 0.437137
Target:  5'- aCGaGUGCcaucaGGUCGCCgCgugCgACGGCCACUa -3'
miRNA:   3'- -GC-CACG-----CCGGCGG-Ga--GgUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 47191 0.67 0.41952
Target:  5'- gCGGcgGCGGCuCGUCCUuggguUCGCGGCgGCg -3'
miRNA:   3'- -GCCa-CGCCG-GCGGGA-----GGUGCUGgUGg -5'
18251 3' -62.8 NC_004681.1 + 46173 0.69 0.281937
Target:  5'- gCGGcuucGCGGCCGaCUUCCAUGuCCAgCCa -3'
miRNA:   3'- -GCCa---CGCCGGCgGGAGGUGCuGGU-GG- -5'
18251 3' -62.8 NC_004681.1 + 45593 0.66 0.455171
Target:  5'- ---gGUGGCCGgugccUCCUCCGCGuCgGCCa -3'
miRNA:   3'- gccaCGCCGGC-----GGGAGGUGCuGgUGG- -5'
18251 3' -62.8 NC_004681.1 + 45448 0.67 0.377424
Target:  5'- uCGGUGUGGUgaugaacgacagCGuCCaCUCCGagcUGGCCACCc -3'
miRNA:   3'- -GCCACGCCG------------GC-GG-GAGGU---GCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 45406 0.72 0.187235
Target:  5'- gCGGUgaaGCGcucagcaacuucGCCG-CCUCCAUGGCCGCCc -3'
miRNA:   3'- -GCCA---CGC------------CGGCgGGAGGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 45364 0.67 0.369352
Target:  5'- aCGG-GCgGGgCGUCCggugcugCCACGAgCACCu -3'
miRNA:   3'- -GCCaCG-CCgGCGGGa------GGUGCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 44582 0.66 0.428275
Target:  5'- ---cGCcGCCGCgCU-CGCGGCCGCCg -3'
miRNA:   3'- gccaCGcCGGCGgGAgGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 44137 0.66 0.473601
Target:  5'- aGGccGCgGGCCugGCCCUCaC-CGGCCGCg -3'
miRNA:   3'- gCCa-CG-CCGG--CGGGAG-GuGCUGGUGg -5'
18251 3' -62.8 NC_004681.1 + 41559 0.67 0.41952
Target:  5'- ---cGCGGCCGCCaugCaGCG-CCACCc -3'
miRNA:   3'- gccaCGCCGGCGGga-GgUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 41126 0.68 0.353568
Target:  5'- uGG-GUGGCUaCCCUgCCGCGAuggauggcaagcCCACCa -3'
miRNA:   3'- gCCaCGCCGGcGGGA-GGUGCU------------GGUGG- -5'
18251 3' -62.8 NC_004681.1 + 40630 0.69 0.288552
Target:  5'- ---gGUGGCCGCCCUCUcccaGCuacuCCGCCa -3'
miRNA:   3'- gccaCGCCGGCGGGAGG----UGcu--GGUGG- -5'
18251 3' -62.8 NC_004681.1 + 40340 0.71 0.238978
Target:  5'- uGGUGUGGuuGCUCgUCUAUGGCUcCCg -3'
miRNA:   3'- gCCACGCCggCGGG-AGGUGCUGGuGG- -5'
18251 3' -62.8 NC_004681.1 + 40241 0.66 0.464338
Target:  5'- gCGGcgucGCGGCCuGCCUgUCCcggGCGGUCACCg -3'
miRNA:   3'- -GCCa---CGCCGG-CGGG-AGG---UGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 39349 0.68 0.353568
Target:  5'- ---cGCGGCgGCCCUUgGCGcCCuuGCCg -3'
miRNA:   3'- gccaCGCCGgCGGGAGgUGCuGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 39255 0.68 0.338265
Target:  5'- gGGcGCcaagGGCCGCCgcgucaaguaCUCCccgaugugcGCGGCCACCa -3'
miRNA:   3'- gCCaCG----CCGGCGG----------GAGG---------UGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 39098 0.71 0.206636
Target:  5'- uGGUggccaccugcGCGGgCaacaCCUUCCGCGACCGCCg -3'
miRNA:   3'- gCCA----------CGCCgGc---GGGAGGUGCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.