Results 21 - 40 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18251 | 3' | -62.8 | NC_004681.1 | + | 39098 | 0.71 | 0.206636 |
Target: 5'- uGGUggccaccugcGCGGgCaacaCCUUCCGCGACCGCCg -3' miRNA: 3'- gCCA----------CGCCgGc---GGGAGGUGCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 45406 | 0.72 | 0.187235 |
Target: 5'- gCGGUgaaGCGcucagcaacuucGCCG-CCUCCAUGGCCGCCc -3' miRNA: 3'- -GCCA---CGC------------CGGCgGGAGGUGCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 32124 | 0.73 | 0.173754 |
Target: 5'- gCGGUcaccGCGGCgGCCCacgCCaACGACCAgCu -3' miRNA: 3'- -GCCA----CGCCGgCGGGa--GG-UGCUGGUgG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 16526 | 0.73 | 0.169456 |
Target: 5'- gCGGgugGCGGCaacgGUCC-CCACGGCgGCCg -3' miRNA: 3'- -GCCa--CGCCGg---CGGGaGGUGCUGgUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 58642 | 0.74 | 0.145619 |
Target: 5'- aGGUGUccugcgccacGGCCGCCUgcgCCGCgGGCCACa -3' miRNA: 3'- gCCACG----------CCGGCGGGa--GGUG-CUGGUGg -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 35477 | 0.77 | 0.086702 |
Target: 5'- gCGGUGUGuacgccGUCGCCUUCCucCGACCACCc -3' miRNA: 3'- -GCCACGC------CGGCGGGAGGu-GCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 8518 | 0.77 | 0.086702 |
Target: 5'- aCGGUGaGaCCGCCC-CCGCGGCCAUCg -3' miRNA: 3'- -GCCACgCcGGCGGGaGGUGCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 61738 | 0.78 | 0.077399 |
Target: 5'- aGGa--GGCCGCCCUcgcgcgccaccagaCCGCGGCCGCCa -3' miRNA: 3'- gCCacgCCGGCGGGA--------------GGUGCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 64718 | 0.7 | 0.262816 |
Target: 5'- uGGUG-GGuCCGCCCaCCugGaACUACCc -3' miRNA: 3'- gCCACgCC-GGCGGGaGGugC-UGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 12780 | 0.69 | 0.281937 |
Target: 5'- uCGGUG-GGUCGCUCcguUCuCACGGCgACCg -3' miRNA: 3'- -GCCACgCCGGCGGG---AG-GUGCUGgUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 29465 | 0.67 | 0.369352 |
Target: 5'- gCGGUGaguCGGUCaCCCUgucccucaCCGgGACCACCu -3' miRNA: 3'- -GCCAC---GCCGGcGGGA--------GGUgCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 10730 | 0.67 | 0.369352 |
Target: 5'- uGGUGCuGGgCGUCC---GCGACCACUg -3' miRNA: 3'- gCCACG-CCgGCGGGaggUGCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 39255 | 0.68 | 0.338265 |
Target: 5'- gGGcGCcaagGGCCGCCgcgucaaguaCUCCccgaugugcGCGGCCACCa -3' miRNA: 3'- gCCaCG----CCGGCGG----------GAGG---------UGCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 511 | 0.68 | 0.32345 |
Target: 5'- uGGaccCGGCCaUCUUCCGCGGCCGCg -3' miRNA: 3'- gCCac-GCCGGcGGGAGGUGCUGGUGg -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 50381 | 0.68 | 0.32345 |
Target: 5'- aGG-GCGGCUaCCgCUaCCACGACUACg -3' miRNA: 3'- gCCaCGCCGGcGG-GA-GGUGCUGGUGg -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 60687 | 0.69 | 0.316226 |
Target: 5'- uGGUGCGGUCuacgGCCgUCUcgaugaggauGCGACC-CCg -3' miRNA: 3'- gCCACGCCGG----CGGgAGG----------UGCUGGuGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 40630 | 0.69 | 0.288552 |
Target: 5'- ---gGUGGCCGCCCUCUcccaGCuacuCCGCCa -3' miRNA: 3'- gccaCGCCGGCGGGAGG----UGcu--GGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 34710 | 0.69 | 0.288552 |
Target: 5'- uCGGUGCGGgcuugggaauucCCGCgCgCUuCGGCCGCCg -3' miRNA: 3'- -GCCACGCC------------GGCGgGaGGuGCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 40241 | 0.66 | 0.464338 |
Target: 5'- gCGGcgucGCGGCCuGCCUgUCCcggGCGGUCACCg -3' miRNA: 3'- -GCCa---CGCCGG-CGGG-AGG---UGCUGGUGG- -5' |
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18251 | 3' | -62.8 | NC_004681.1 | + | 25158 | 0.79 | 0.058222 |
Target: 5'- aGGUGCcgcccgcGCCGCCCUCUGCGGUCACCg -3' miRNA: 3'- gCCACGc------CGGCGGGAGGUGCUGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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