miRNA display CGI


Results 21 - 40 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18251 3' -62.8 NC_004681.1 + 27978 0.69 0.295287
Target:  5'- uGGU---GCCGCCCgagCCAUGuCCGCCa -3'
miRNA:   3'- gCCAcgcCGGCGGGa--GGUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 46173 0.69 0.281937
Target:  5'- gCGGcuucGCGGCCGaCUUCCAUGuCCAgCCa -3'
miRNA:   3'- -GCCa---CGCCGGCgGGAGGUGCuGGU-GG- -5'
18251 3' -62.8 NC_004681.1 + 62618 0.7 0.244762
Target:  5'- uCGGagGCGGCUGCCagggugcCCAUGGCCuggGCCa -3'
miRNA:   3'- -GCCa-CGCCGGCGGga-----GGUGCUGG---UGG- -5'
18251 3' -62.8 NC_004681.1 + 28251 0.74 0.141956
Target:  5'- cCGGUGCcgcuGCCGCCgcucgaUCCGCcGCCGCCg -3'
miRNA:   3'- -GCCACGc---CGGCGGg-----AGGUGcUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 11970 0.67 0.376611
Target:  5'- uCGGUGaCGucgguacGCUGCgCgcgCCGCGACUGCCa -3'
miRNA:   3'- -GCCAC-GC-------CGGCGgGa--GGUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 7301 0.68 0.330797
Target:  5'- cCGGcacCGGCCGCCUUCU-CGAgUACCu -3'
miRNA:   3'- -GCCac-GCCGGCGGGAGGuGCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 7170 0.7 0.26907
Target:  5'- cCGGUGgGggguGCCGUCCUUCAUGG-CGCCg -3'
miRNA:   3'- -GCCACgC----CGGCGGGAGGUGCUgGUGG- -5'
18251 3' -62.8 NC_004681.1 + 24953 0.76 0.096304
Target:  5'- aGGgagccuugGCGGCCGCCgC-CCGCG-CCGCCg -3'
miRNA:   3'- gCCa-------CGCCGGCGG-GaGGUGCuGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 48859 0.68 0.330797
Target:  5'- aGGUGUaGCCGCCgUCCugGagguGCUggACCa -3'
miRNA:   3'- gCCACGcCGGCGGgAGGugC----UGG--UGG- -5'
18251 3' -62.8 NC_004681.1 + 30948 0.77 0.091384
Target:  5'- gCGGgcgGCGuGCCGUCCUCCACGAUgGguCCg -3'
miRNA:   3'- -GCCa--CGC-CGGCGGGAGGUGCUGgU--GG- -5'
18251 3' -62.8 NC_004681.1 + 3017 0.7 0.26907
Target:  5'- gCGGUGCcGUCGCCCagCCA-GGCCcCCa -3'
miRNA:   3'- -GCCACGcCGGCGGGa-GGUgCUGGuGG- -5'
18251 3' -62.8 NC_004681.1 + 33860 0.69 0.302145
Target:  5'- uGGUGCGGaaGCUCccagCCGCGcucgGCCGCUu -3'
miRNA:   3'- gCCACGCCggCGGGa---GGUGC----UGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 30259 0.7 0.253657
Target:  5'- aGGUccacuccGCGGCCGCgCCgccugagcccgacCCACaGGCCGCCu -3'
miRNA:   3'- gCCA-------CGCCGGCG-GGa------------GGUG-CUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 7678 0.7 0.247109
Target:  5'- aGGUGCcaucacggccuccccGGCCGUCCUCCACcguguaGACgACa -3'
miRNA:   3'- gCCACG---------------CCGGCGGGAGGUG------CUGgUGg -5'
18251 3' -62.8 NC_004681.1 + 65183 0.73 0.173754
Target:  5'- --uUGCcaGGCCGaCCUCgGCGACCACCc -3'
miRNA:   3'- gccACG--CCGGCgGGAGgUGCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 18293 0.74 0.149367
Target:  5'- gGGUGC-GCCgggagGCgCUCCAgGACCGCCa -3'
miRNA:   3'- gCCACGcCGG-----CGgGAGGUgCUGGUGG- -5'
18251 3' -62.8 NC_004681.1 + 19896 0.67 0.393919
Target:  5'- gCGGUacugGCGGCCGUUCUUaGCGgaGCCGCa -3'
miRNA:   3'- -GCCA----CGCCGGCGGGAGgUGC--UGGUGg -5'
18251 3' -62.8 NC_004681.1 + 20137 0.67 0.377424
Target:  5'- aGGUagcGCGGCCaCCCgUCCugGucuCCGCg -3'
miRNA:   3'- gCCA---CGCCGGcGGG-AGGugCu--GGUGg -5'
18251 3' -62.8 NC_004681.1 + 10298 0.68 0.3614
Target:  5'- aGGUGUGGCCgGUgCUCCACucggaGCCg -3'
miRNA:   3'- gCCACGCCGG-CGgGAGGUGcugg-UGG- -5'
18251 3' -62.8 NC_004681.1 + 62982 0.68 0.338265
Target:  5'- uGGUGCGGa-GCuCUUCCA-GGCCGCUu -3'
miRNA:   3'- gCCACGCCggCG-GGAGGUgCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.