miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18264 5' -59.2 NC_004681.1 + 55648 0.66 0.644178
Target:  5'- gCCCCAgCCGGUgauuccgacuagGGCCUUgaugguuaUGGCGGcGGu -3'
miRNA:   3'- -GGGGUgGGCCG------------UCGGAGa-------ACUGCU-CC- -5'
18264 5' -59.2 NC_004681.1 + 57384 0.66 0.63382
Target:  5'- aCCCUuCUCGGCuaccagguuuGGCCUCUUG-CGAc- -3'
miRNA:   3'- -GGGGuGGGCCG----------UCGGAGAACuGCUcc -5'
18264 5' -59.2 NC_004681.1 + 58751 0.66 0.63382
Target:  5'- gCCCGCggcgcaGGCGGCCg--UGGCGcAGGa -3'
miRNA:   3'- gGGGUGgg----CCGUCGGagaACUGC-UCC- -5'
18264 5' -59.2 NC_004681.1 + 51787 0.66 0.617247
Target:  5'- cCCCCGCCCGGaauccaCCUgUUGAguucgggccauggggUGGGGa -3'
miRNA:   3'- -GGGGUGGGCCguc---GGAgAACU---------------GCUCC- -5'
18264 5' -59.2 NC_004681.1 + 32001 0.66 0.613107
Target:  5'- gCCCGCgaUGGCGGCCgcc--GCGAGGu -3'
miRNA:   3'- gGGGUGg-GCCGUCGGagaacUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 2903 0.66 0.602769
Target:  5'- aCCCCuacauCCUGGgGGCCUggCUgGGCGAcGGc -3'
miRNA:   3'- -GGGGu----GGGCCgUCGGA--GAaCUGCU-CC- -5'
18264 5' -59.2 NC_004681.1 + 60048 0.66 0.601737
Target:  5'- uCCCgCACCUGGCaccggcugaccguGGCCaUCgagGACGcGGg -3'
miRNA:   3'- -GGG-GUGGGCCG-------------UCGG-AGaa-CUGCuCC- -5'
18264 5' -59.2 NC_004681.1 + 8323 0.67 0.589364
Target:  5'- aCCUCgGCCUGGUgggccuugaagucgGGUUcgaUCUUGGCGAGGg -3'
miRNA:   3'- -GGGG-UGGGCCG--------------UCGG---AGAACUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 58878 0.67 0.571918
Target:  5'- aUCCACUCcucgacCAGCUUCUcgcUGACGAGGa -3'
miRNA:   3'- gGGGUGGGcc----GUCGGAGA---ACUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 24939 0.67 0.571918
Target:  5'- gCCgCCGCCCGcGCcGCCgacgccGAUGAGGu -3'
miRNA:   3'- -GG-GGUGGGC-CGuCGGagaa--CUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 33366 0.67 0.571918
Target:  5'- --aCACCCGGCAGCggaaCU--GCGAGGa -3'
miRNA:   3'- gggGUGGGCCGUCGga--GAacUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 49825 0.67 0.551557
Target:  5'- -gCCGCCCuGGCugcGCUUCUUgcggugGugGAGGg -3'
miRNA:   3'- ggGGUGGG-CCGu--CGGAGAA------CugCUCC- -5'
18264 5' -59.2 NC_004681.1 + 16117 0.67 0.551557
Target:  5'- gCCCUugCCaGCAGCCgg--GACGAu- -3'
miRNA:   3'- -GGGGugGGcCGUCGGagaaCUGCUcc -5'
18264 5' -59.2 NC_004681.1 + 1532 0.68 0.531422
Target:  5'- aCCCCuggugACCgGGcCAGCCUucagCUgggcGGCGGGGg -3'
miRNA:   3'- -GGGG-----UGGgCC-GUCGGA----GAa---CUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 61758 0.68 0.531422
Target:  5'- cCUCCGCggCGGCGGCUUCUgcgcgcagcuUGGCGAuGGu -3'
miRNA:   3'- -GGGGUGg-GCCGUCGGAGA----------ACUGCU-CC- -5'
18264 5' -59.2 NC_004681.1 + 48704 0.68 0.530422
Target:  5'- uCCCCGuCCUcuuGGCGgaugccuGCCUCU--GCGAGGg -3'
miRNA:   3'- -GGGGU-GGG---CCGU-------CGGAGAacUGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 37771 0.68 0.501742
Target:  5'- aUCCCACUgGGagaAGUC-CUUGuCGAGGa -3'
miRNA:   3'- -GGGGUGGgCCg--UCGGaGAACuGCUCC- -5'
18264 5' -59.2 NC_004681.1 + 23738 0.68 0.501742
Target:  5'- gCUCACCCGGCucGCCgUCgucGGCGAacGGg -3'
miRNA:   3'- gGGGUGGGCCGu-CGG-AGaa-CUGCU--CC- -5'
18264 5' -59.2 NC_004681.1 + 23337 0.68 0.49201
Target:  5'- aCCUCuuCCGGCAGCUUCagGcgccCGAGGu -3'
miRNA:   3'- -GGGGugGGCCGUCGGAGaaCu---GCUCC- -5'
18264 5' -59.2 NC_004681.1 + 43887 0.68 0.482365
Target:  5'- gCCCUGCUCGGUcGCCUCUaUGGCugcuGGa -3'
miRNA:   3'- -GGGGUGGGCCGuCGGAGA-ACUGcu--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.