miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18267 3' -59.9 NC_004681.1 + 74845 0.72 0.254477
Target:  5'- aUGGUGA-GGCGGAG-GAcacCCGCGGCc -3'
miRNA:   3'- -ACCGCUaCCGCCUCgCUu--GGUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 74345 0.75 0.170288
Target:  5'- gGGCaAUGGCuGAGCacauGAGCUACGGCGg -3'
miRNA:   3'- aCCGcUACCGcCUCG----CUUGGUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 69223 0.7 0.345811
Target:  5'- aGGCGAgggaggccagGGCGcGGGCGAG--GCGGCGc -3'
miRNA:   3'- aCCGCUa---------CCGC-CUCGCUUggUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 69012 0.67 0.522515
Target:  5'- cGGUGgcGGCGGccgugacgauggucAGCGccucgauggcgucGGCCGCGGCc -3'
miRNA:   3'- aCCGCuaCCGCC--------------UCGC-------------UUGGUGCCGc -5'
18267 3' -59.9 NC_004681.1 + 68612 0.66 0.556888
Target:  5'- aUGGCGcccaGGCGugccGCGAGCCAuucagUGGCGg -3'
miRNA:   3'- -ACCGCua--CCGCcu--CGCUUGGU-----GCCGC- -5'
18267 3' -59.9 NC_004681.1 + 67268 0.68 0.466895
Target:  5'- gUGGCGAUGcGaCGGAcauccauGCGGACUGaGGCGu -3'
miRNA:   3'- -ACCGCUAC-C-GCCU-------CGCUUGGUgCCGC- -5'
18267 3' -59.9 NC_004681.1 + 65345 0.66 0.577413
Target:  5'- aGGCGAUGGCuuucacgaGGuGCGGcagGCCGCuGuCGg -3'
miRNA:   3'- aCCGCUACCG--------CCuCGCU---UGGUGcC-GC- -5'
18267 3' -59.9 NC_004681.1 + 64348 0.67 0.526519
Target:  5'- cGGCGGUGuGCGGuucGGgGAuuucauGCCAgCGGCc -3'
miRNA:   3'- aCCGCUAC-CGCC---UCgCU------UGGU-GCCGc -5'
18267 3' -59.9 NC_004681.1 + 62957 0.71 0.287044
Target:  5'- cGGCGGUGGUGGcGGCG----GCGGCGc -3'
miRNA:   3'- aCCGCUACCGCC-UCGCuuggUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 62891 0.68 0.438872
Target:  5'- aGGCGGuucaccuUGGCGuuGGCGAuaGCCAacuCGGCGg -3'
miRNA:   3'- aCCGCU-------ACCGCc-UCGCU--UGGU---GCCGC- -5'
18267 3' -59.9 NC_004681.1 + 62567 0.66 0.577413
Target:  5'- aGGaGAUGGaacgccgGGAGCGcGCCGaGGCGg -3'
miRNA:   3'- aCCgCUACCg------CCUCGCuUGGUgCCGC- -5'
18267 3' -59.9 NC_004681.1 + 62175 0.66 0.545687
Target:  5'- cGGCGGgcacgGGCGGcaagaucGGCGAGauugaggaCAUGGUGg -3'
miRNA:   3'- aCCGCUa----CCGCC-------UCGCUUg-------GUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 61859 0.7 0.353736
Target:  5'- cUGGcCGAUGGCGGccgcggucugguGGCGcGCgAgGGCGg -3'
miRNA:   3'- -ACC-GCUACCGCC------------UCGCuUGgUgCCGC- -5'
18267 3' -59.9 NC_004681.1 + 52310 0.67 0.4774
Target:  5'- cGGgGAUGGCGGGGCcguUCuuGGCc -3'
miRNA:   3'- aCCgCUACCGCCUCGcuuGGugCCGc -5'
18267 3' -59.9 NC_004681.1 + 51606 0.68 0.430654
Target:  5'- aGGUGGUGGCGucGGUGuAGCCGagcUGGCGg -3'
miRNA:   3'- aCCGCUACCGCc-UCGC-UUGGU---GCCGC- -5'
18267 3' -59.9 NC_004681.1 + 47469 0.66 0.577413
Target:  5'- gUGGCGcguUGGCGG-GCGAcuaaguagucgACUucguUGGCGg -3'
miRNA:   3'- -ACCGCu--ACCGCCuCGCU-----------UGGu---GCCGC- -5'
18267 3' -59.9 NC_004681.1 + 46939 0.68 0.449037
Target:  5'- cGG-GGUGcCGGGGCGGuuGCCGCGGgGc -3'
miRNA:   3'- aCCgCUACcGCCUCGCU--UGGUGCCgC- -5'
18267 3' -59.9 NC_004681.1 + 46754 0.66 0.567127
Target:  5'- gUGGUGGgaccGGCGcuGCGcGCgCACGGCGu -3'
miRNA:   3'- -ACCGCUa---CCGCcuCGCuUG-GUGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 46717 0.73 0.225005
Target:  5'- gGGCG-UGuGCGGGGCGGgguCCuCGGCGa -3'
miRNA:   3'- aCCGCuAC-CGCCUCGCUu--GGuGCCGC- -5'
18267 3' -59.9 NC_004681.1 + 45786 0.72 0.266481
Target:  5'- cGGCGA-GGCGGGgcuugaguuccucGCGGACaACGGUGg -3'
miRNA:   3'- aCCGCUaCCGCCU-------------CGCUUGgUGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.