Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18267 | 3' | -59.9 | NC_004681.1 | + | 13632 | 1.09 | 0.000546 |
Target: 5'- aUGGCGAUGGCGGAGCGAACCACGGCGg -3' miRNA: 3'- -ACCGCUACCGCCUCGCUUGGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 44691 | 0.7 | 0.361789 |
Target: 5'- gGGUGAguagugcGGCGGccGCGAG-CGCGGCGg -3' miRNA: 3'- aCCGCUa------CCGCCu-CGCUUgGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 14486 | 0.69 | 0.395253 |
Target: 5'- uUGGCGucGGCGauGCGGuucuCCGCGGCGa -3' miRNA: 3'- -ACCGCuaCCGCcuCGCUu---GGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 3238 | 0.66 | 0.58774 |
Target: 5'- aGGCccUGGaGGAggGCGAGCCGCugGGCGc -3' miRNA: 3'- aCCGcuACCgCCU--CGCUUGGUG--CCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 46717 | 0.73 | 0.225005 |
Target: 5'- gGGCG-UGuGCGGGGCGGgguCCuCGGCGa -3' miRNA: 3'- aCCGCuAC-CGCCUCGCUu--GGuGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 13131 | 0.73 | 0.235848 |
Target: 5'- uUGGCGAUGGCGGcgaugacAGUGucagUCGCGGCc -3' miRNA: 3'- -ACCGCUACCGCC-------UCGCuu--GGUGCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 74845 | 0.72 | 0.254477 |
Target: 5'- aUGGUGA-GGCGGAG-GAcacCCGCGGCc -3' miRNA: 3'- -ACCGCUaCCGCCUCgCUu--GGUGCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 45786 | 0.72 | 0.266481 |
Target: 5'- cGGCGA-GGCGGGgcuugaguuccucGCGGACaACGGUGg -3' miRNA: 3'- aCCGCUaCCGCCU-------------CGCUUGgUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 37127 | 0.71 | 0.300962 |
Target: 5'- cUGGCGAUGGCcggaaGGAGUGucagcGuuGCGGCa -3' miRNA: 3'- -ACCGCUACCG-----CCUCGCu----UggUGCCGc -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 14563 | 0.7 | 0.353736 |
Target: 5'- cGGCGGaGGCGGcGCG---CGCGGCGu -3' miRNA: 3'- aCCGCUaCCGCCuCGCuugGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 16201 | 0.7 | 0.322806 |
Target: 5'- -aGCcGUGGCGGcuguGCGcGCCGCGGUGg -3' miRNA: 3'- acCGcUACCGCCu---CGCuUGGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 7455 | 0.72 | 0.273638 |
Target: 5'- gGGCu-UGGCGGgaGGCuucGCCGCGGCGg -3' miRNA: 3'- aCCGcuACCGCC--UCGcu-UGGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 9863 | 0.85 | 0.031741 |
Target: 5'- uUGGCGuaGGCGGAGUGGACCGCGGgGa -3' miRNA: 3'- -ACCGCuaCCGCCUCGCUUGGUGCCgC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 69223 | 0.7 | 0.345811 |
Target: 5'- aGGCGAgggaggccagGGCGcGGGCGAG--GCGGCGc -3' miRNA: 3'- aCCGCUa---------CCGC-CUCGCUUggUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 74345 | 0.75 | 0.170288 |
Target: 5'- gGGCaAUGGCuGAGCacauGAGCUACGGCGg -3' miRNA: 3'- aCCGcUACCGcCUCG----CUUGGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 16025 | 0.72 | 0.273638 |
Target: 5'- -aGCGAUGGCcuGGAuggucuugaccGCG-GCCACGGCGa -3' miRNA: 3'- acCGCUACCG--CCU-----------CGCuUGGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 61859 | 0.7 | 0.353736 |
Target: 5'- cUGGcCGAUGGCGGccgcggucugguGGCGcGCgAgGGCGg -3' miRNA: 3'- -ACC-GCUACCGCC------------UCGCuUGgUgCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 1927 | 0.69 | 0.369968 |
Target: 5'- cGGCG-UGGUGGAGUuuGACCACGuCGa -3' miRNA: 3'- aCCGCuACCGCCUCGc-UUGGUGCcGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 45210 | 0.74 | 0.202024 |
Target: 5'- cUGcGCGAcGGCGucggccccggucuuGAGCGAGaCCGCGGCGa -3' miRNA: 3'- -AC-CGCUaCCGC--------------CUCGCUU-GGUGCCGC- -5' |
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18267 | 3' | -59.9 | NC_004681.1 | + | 13219 | 0.73 | 0.236431 |
Target: 5'- gGGCGGUGGCGGgcAGCGGGgCG-GGUGu -3' miRNA: 3'- aCCGCUACCGCC--UCGCUUgGUgCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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